Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bcgsc/btllib issues and pull requests

#130 - Raise error when filename has spaces

Pull Request - State: open - Opened by parham-k 10 days ago

#129 - Indexlr: spaces are not supported in file path

Issue - State: open - Opened by mxwang66 12 days ago - 6 comments

#128 - MacOS CI Fix

Pull Request - State: closed - Opened by lcoombe about 1 month ago

#127 - Indexlr python wrapper doesn't work with multiprocessing

Issue - State: closed - Opened by mxwang66 about 1 month ago - 4 comments

#126 - Bump version to 1.7.3

Pull Request - State: closed - Opened by parham-k 4 months ago

#125 - mi_bloom_filter-inl.hpp: remove uint type

Pull Request - State: closed - Opened by jwcodee 4 months ago

#124 - Fix CI

Pull Request - State: closed - Opened by lcoombe 4 months ago

#123 - btllib 1.7.2 build failure on macos

Issue - State: closed - Opened by chenrui333 4 months ago - 4 comments

#122 - Update README.md and fix CI

Pull Request - State: closed - Opened by lcoombe 4 months ago - 1 comment

#121 - mi_bloom_filter-inl.hpp: remove uint type

Pull Request - State: closed - Opened by jwcodee 4 months ago

#120 - Add a setter method for seq in ntHash

Pull Request - State: open - Opened by parham-k 7 months ago

#119 - Update CBFs for true counts in ntHits

Pull Request - State: closed - Opened by parham-k 8 months ago - 1 comment

#118 - Fix masked seq in ntHash/indexlr

Pull Request - State: closed - Opened by parham-k 8 months ago

#116 - Update README.md with aaHash citation

Pull Request - State: closed - Opened by lcoombe 12 months ago

#115 - Update hash functions

Pull Request - State: closed - Opened by parham-k about 1 year ago

#114 - Unexpected SeqReader behaviour with multi-line fasta files

Issue - State: closed - Opened by lcoombe about 1 year ago - 5 comments

#113 - Update README.md

Pull Request - State: closed - Opened by lcoombe about 1 year ago

#112 - aahash.cpp: set pos to numerical max when iterator cannot advance

Pull Request - State: closed - Opened by jwcodee about 1 year ago

#111 - Build installs the python binding into a wrong location

Issue - State: closed - Opened by yurivict over 1 year ago - 2 comments

#110 - error: variable 'vals' set but not used [-Werror,-Wunused-but-set-variable]

Issue - State: closed - Opened by yurivict over 1 year ago - 2 comments

#109 - Expand Indexlr to use AAHash

Pull Request - State: open - Opened by jwcodee over 1 year ago

#108 - PhredNtHash class

Pull Request - State: open - Opened by jwcodee over 1 year ago

#107 - ntHash with a Phred filter

Issue - State: open - Opened by jwcodee over 1 year ago - 6 comments
Labels: enhancement

#106 - README.md: remove lgtm badges

Pull Request - State: closed - Opened by jwcodee over 1 year ago

#105 - Bump version

Pull Request - State: closed - Opened by parham-k over 1 year ago

#104 - Calculate Phred Average

Pull Request - State: closed - Opened by jwcodee over 1 year ago

#103 - Bash strict mode and minor fixes

Pull Request - State: closed - Opened by vlad0x00 over 1 year ago

#102 - Fix gcovr

Pull Request - State: closed - Opened by parham-k over 1 year ago

#101 - Update ntHash and RandSeq

Pull Request - State: closed - Opened by parham-k over 1 year ago

#99 - seq.cpp: add ambiguous aa iupac code

Pull Request - State: closed - Opened by jwcodee over 1 year ago

#98 - Build fails: undefined symbol: btllib::KmerBloomFilter::KmerBloomFilter

Issue - State: closed - Opened by yurivict over 1 year ago - 7 comments

#97 - Bump version

Pull Request - State: closed - Opened by parham-k over 1 year ago

#96 - Use mamba in Azure CI to expediate CI tests

Pull Request - State: closed - Opened by jwcodee over 1 year ago

#95 - Fix gcc compilation issue on macOS

Pull Request - State: closed - Opened by parham-k over 1 year ago

#94 - Errors when compiling with GCC on macOS

Issue - State: closed - Opened by parham-k over 1 year ago
Labels: bug

#93 - bash shebang is wrong

Issue - State: open - Opened by yurivict over 1 year ago

#92 - Compilation failure for v1.6.0 on macOS

Issue - State: closed - Opened by p-linnane over 1 year ago - 6 comments

#91 - Version bump for release 1.6.0

Pull Request - State: closed - Opened by parham-k over 1 year ago

#90 - Adapt code to C++17 standards

Issue - State: closed - Opened by parham-k over 1 year ago - 2 comments

#89 - Mirror all C++ tests for wrappers

Pull Request - State: closed - Opened by MurathanGoktas over 1 year ago
Labels: bug, enhancement

#88 - AAHash

Pull Request - State: closed - Opened by jwcodee over 1 year ago - 10 comments

#87 - Fix mibf wrapper

Pull Request - State: closed - Opened by parham-k over 1 year ago - 4 comments

#85 - Code coverage and additional tests

Pull Request - State: closed - Opened by MurathanGoktas over 1 year ago - 10 comments
Labels: enhancement

#84 - Rename RandomSequenceGenerator to RandSeq

Pull Request - State: closed - Opened by parham-k over 1 year ago

#83 - Add python wrapper tests for Indexlr and RandomSequenceGenerator

Pull Request - State: closed - Opened by lcoombe over 1 year ago - 3 comments

#82 - Fix wrappers

Pull Request - State: closed - Opened by parham-k over 1 year ago - 2 comments

#81 - Use size_t for block number

Pull Request - State: closed - Opened by vpa1977 over 1 year ago

#80 - Deadlock on 32bit architectures

Issue - State: closed - Opened by vpa1977 over 1 year ago

#79 - Indexlr mx filter

Pull Request - State: open - Opened by aafshinfard over 1 year ago - 2 comments

#78 - Random sequence generator

Pull Request - State: closed - Opened by parham-k almost 2 years ago

#77 - Indexlr: skip low quality minimizers

Pull Request - State: closed - Opened by aafshinfard almost 2 years ago - 1 comment

#77 - Indexlr: skip low quality minimizers

Pull Request - State: closed - Opened by aafshinfard almost 2 years ago - 1 comment

#76 - possible issue with seqreader wrappers

Issue - State: closed - Opened by aafshinfard almost 2 years ago - 1 comment

#75 - re-generating wrappers

Pull Request - State: closed - Opened by aafshinfard almost 2 years ago - 3 comments

#74 - stLFR indexlr fix

Pull Request - State: closed - Opened by lcoombe almost 2 years ago - 1 comment

#73 - indexlr fails to read the barcode (10x format)

Issue - State: closed - Opened by aafshinfard almost 2 years ago - 2 comments

#72 - btllib not compatible with pypy on Conda

Issue - State: open - Opened by aafshinfard almost 2 years ago

#71 - btllib/indexlr fails to read barcode information

Issue - State: closed - Opened by aafshinfard almost 2 years ago - 1 comment

#70 - Update README

Pull Request - State: closed - Opened by jwcodee almost 2 years ago

#69 - Use conda to install dependencies for azure linux CI

Pull Request - State: closed - Opened by jwcodee almost 2 years ago

#68 - ERROR: C++ shared or static library 'btllib' not found

Issue - State: closed - Opened by Duda5 almost 2 years ago - 2 comments

#67 - Updates for Counting Bloom Filters

Pull Request - State: closed - Opened by parham-k almost 2 years ago

#66 - CI MacOS Fix

Pull Request - State: closed - Opened by parham-k almost 2 years ago

#65 - Python version issue on install

Issue - State: closed - Opened by berkeucar almost 2 years ago - 1 comment

#64 - Seq Reader FAA Module

Pull Request - State: closed - Opened by jwcodee about 2 years ago - 2 comments

#63 - Ci test

Pull Request - State: closed - Opened by vlad0x00 about 2 years ago

#62 - btllib fails meson tests on 32-bit archs

Issue - State: closed - Opened by nileshpatra about 2 years ago - 2 comments

#61 - mi-Bf refactoring and tests

Pull Request - State: closed - Opened by MurathanGoktas about 2 years ago - 1 comment

#60 - Update README.md

Pull Request - State: closed - Opened by aafshinfard about 2 years ago

#59 - Review: Indexlr phred filter

Pull Request - State: closed - Opened by aafshinfard over 2 years ago - 3 comments

#58 - Use meson Python module

Issue - State: open - Opened by vlad0x00 over 2 years ago
Labels: enhancement

#57 - setup.py

Pull Request - State: closed - Opened by parham-k over 2 years ago - 3 comments

#56 - Tracking SeqReader progress using pv

Issue - State: open - Opened by vlad0x00 over 2 years ago - 2 comments
Labels: enhancement

#55 - Consider Infer for static analysis

Issue - State: open - Opened by vlad0x00 over 2 years ago
Labels: enhancement

#54 - Update MIBF

Issue - State: closed - Opened by vlad0x00 over 2 years ago
Labels: enhancement

#53 - Data stream thread limit

Issue - State: open - Opened by vlad0x00 over 2 years ago
Labels: enhancement

#52 - SeedNtHash canonical hashing fix

Pull Request - State: closed - Opened by parham-k over 2 years ago

#51 - nthash

Pull Request - State: closed - Opened by parham-k over 2 years ago - 1 comment

#50 - Add additional methods to CBF

Pull Request - State: closed - Opened by vlad0x00 over 2 years ago

#49 - For indexlr python wrapper, allow passing sequences in memory

Issue - State: open - Opened by lcoombe over 2 years ago
Labels: enhancement

#48 - SWIG seems to ignore Python constructors with std::vector<std::string> parameters

Issue - State: open - Opened by parham-k over 2 years ago - 1 comment
Labels: bug

#47 - Enable more sanitation modes

Issue - State: open - Opened by vlad0x00 over 2 years ago
Labels: enhancement

#46 - Add long-to-linked-pe to btllib recipes

Issue - State: open - Opened by lcoombe over 2 years ago
Labels: enhancement

#45 - Weird stall when running tests on Mac with M1 processor

Issue - State: open - Opened by vlad0x00 over 2 years ago
Labels: bug

#44 - ntHash Optimizations

Pull Request - State: closed - Opened by parham-k almost 3 years ago

#43 - Fix wrap's sed error on BSD/Mac

Pull Request - State: closed - Opened by parham-k almost 3 years ago - 8 comments

#42 - Issue with wrap script on mac

Issue - State: closed - Opened by parham-k almost 3 years ago - 2 comments
Labels: bug

#41 - Quick switch between ntHash and aaHash

Issue - State: closed - Opened by parham-k almost 3 years ago
Labels: enhancement

#40 - Re-enable cppcheck CI

Issue - State: closed - Opened by vlad0x00 almost 3 years ago - 1 comment
Labels: bug

#39 - Indexlr configurable hash function

Issue - State: open - Opened by vlad0x00 almost 3 years ago
Labels: enhancement

#38 - Sam module bug fix

Pull Request - State: closed - Opened by MurathanGoktas almost 3 years ago
Labels: bug

#27 - ntHash Spaced Seeds

Pull Request - State: closed - Opened by parham-k almost 3 years ago - 1 comment

#26 - Add recipes to btllib

Issue - State: closed - Opened by vlad0x00 almost 3 years ago - 1 comment
Labels: enhancement

#25 - Add GFA2 support in SeqReader

Issue - State: open - Opened by vlad0x00 almost 3 years ago
Labels: enhancement

#24 - Indexlr mandatory short/long flag

Issue - State: closed - Opened by vlad0x00 almost 3 years ago - 1 comment
Labels: enhancement, good first issue

#23 - Add code coverage measurement and any missing tests

Issue - State: closed - Opened by vlad0x00 almost 3 years ago
Labels: enhancement

#22 - SeqWriter should be asynchronous

Issue - State: open - Opened by vlad0x00 almost 3 years ago
Labels: enhancement