Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bayer-science-for-a-better-life/paquo issues and pull requests

#99 - adding lower dimension svs images to qupath

Issue - State: closed - Opened by jjagtap almost 2 years ago - 2 comments

#98 - Retrieve path_class_probability (when using add_annotation) in QuPath software

Issue - State: closed - Opened by amor-volastra almost 2 years ago - 2 comments

#97 - Prevent deprecation warnings

Pull Request - State: closed - Opened by ap-- almost 2 years ago

#96 - Fix measurements

Pull Request - State: closed - Opened by ap-- almost 2 years ago

#95 - Are detection measurements writable?

Issue - State: closed - Opened by choosehappy almost 2 years ago - 11 comments
Labels: bug

#94 - Test against QuPath 0.4.3

Pull Request - State: closed - Opened by ap-- almost 2 years ago

#93 - Repo standardization

Pull Request - State: closed - Opened by ap-- about 2 years ago

#92 - Exception: Java Exception error

Issue - State: closed - Opened by abehzadnia about 2 years ago - 2 comments
Labels: awaiting reply 📩

#91 - Test against newer QuPath

Pull Request - State: closed - Opened by ap-- about 2 years ago

#90 - Test against QuPath 0.4.1

Pull Request - State: closed - Opened by ap-- about 2 years ago - 2 comments

#89 - CVE-2007-4559 Patch

Pull Request - State: closed - Opened by TrellixVulnTeam about 2 years ago - 1 comment

#88 - paquo.projects: add all available scences

Pull Request - State: closed - Opened by ap-- over 2 years ago - 1 comment

#87 - Fix m1 jvm issue

Pull Request - State: closed - Opened by ap-- over 2 years ago

#86 - Using paquo on M1 mac errors with OSError

Issue - State: closed - Opened by ap-- over 2 years ago

#85 - Refactor image provider

Pull Request - State: closed - Opened by ap-- over 2 years ago - 1 comment

#84 - ci: test against python 3.11

Pull Request - State: closed - Opened by ap-- over 2 years ago - 1 comment

#83 - Prepare 0.6.0 release

Issue - State: closed - Opened by ap-- over 2 years ago - 1 comment

#82 - add_image() for multi-scene images

Issue - State: closed - Opened by mezwick over 2 years ago - 7 comments
Labels: bug

#81 - Refactor and simplify URI handling

Issue - State: closed - Opened by ap-- over 2 years ago
Labels: refactor

#80 - Fix windows network share URIs in paquo

Pull Request - State: closed - Opened by ap-- over 2 years ago - 2 comments

#79 - Add possibility to remove image from QuPath project

Pull Request - State: closed - Opened by abailoni over 2 years ago - 4 comments

#78 - Add possibility to delete images from QuPath project

Issue - State: closed - Opened by abailoni over 2 years ago - 2 comments
Labels: enhancement

#77 - Provide interface to run groovy scripts

Issue - State: open - Opened by ap-- over 2 years ago
Labels: enhancement

#76 - Example to show how to add annotations as children of other annotations

Issue - State: open - Opened by Mena-SA-Kamel over 2 years ago - 2 comments
Labels: question

#75 - Ci switch to pip

Pull Request - State: closed - Opened by ap-- over 2 years ago

#74 - extract qupath project images in python via paquo

Issue - State: closed - Opened by mezwick over 2 years ago - 2 comments
Labels: question

#73 - `PAQUO__QUPATH_DIR` vs `PAQUO_QUPATH_DIR`

Issue - State: closed - Opened by ap-- over 2 years ago

#72 - Glib error when accessing images

Issue - State: closed - Opened by LeoMH over 2 years ago - 8 comments

#71 - Getting Current Qupath Program

Issue - State: open - Opened by HistoCleanQUB over 2 years ago - 4 comments
Labels: question

#70 - google codelab installation issue

Issue - State: closed - Opened by delta2golf almost 3 years ago - 3 comments

#69 - Importing QuPathProject taking up >100GB memory

Issue - State: open - Opened by hwarden162 almost 3 years ago - 8 comments
Labels: bug

#68 - Support writing annotations as segmentation mask

Issue - State: open - Opened by ap-- almost 3 years ago
Labels: enhancement

#67 - Installation on Windows 10: Error by the Java Runtime Environment

Issue - State: closed - Opened by roxhannes about 3 years ago - 15 comments
Labels: bug

#66 - is it possible to run cell detection on QuPath from paquo?

Issue - State: open - Opened by cornhundred over 3 years ago - 2 comments
Labels: question

#64 - Slide tile generation

Issue - State: open - Opened by RhDm over 3 years ago - 6 comments

#63 - Add example of putting detection measurements into a DataFrame

Pull Request - State: closed - Opened by nickdelgrosso over 3 years ago - 1 comment

#62 - windows tests fail...

Issue - State: closed - Opened by ap-- over 3 years ago - 2 comments
Labels: help wanted

#60 - QuPath v0.3.0-rc1 compatibility issues

Issue - State: closed - Opened by ap-- over 3 years ago - 1 comment
Labels: bug

#59 - Update_path_class speed

Issue - State: closed - Opened by choosehappy over 3 years ago - 3 comments
Labels: bug

#58 - Access detections by index

Issue - State: closed - Opened by choosehappy over 3 years ago - 4 comments
Labels: enhancement

#57 - create test case for relative path uris

Issue - State: closed - Opened by ap-- over 3 years ago

#56 - Add mpp level of image to QuPathProjectImageEntry?

Issue - State: closed - Opened by ipa-tys almost 4 years ago - 2 comments

#55 - Changing slide and thumbnail URIs in an existing project

Issue - State: closed - Opened by ipa-tys almost 4 years ago - 2 comments

#54 - provide a bulk_update contextmanager for annotation modifications

Issue - State: closed - Opened by ap-- almost 4 years ago

#53 - Annotations not updating

Issue - State: closed - Opened by hhoeflin almost 4 years ago - 2 comments

#52 - Remove configuration of logger with basicConfig from library

Issue - State: closed - Opened by hhoeflin almost 4 years ago - 2 comments

#50 - test: qupath behavior when opened project is updated

Issue - State: open - Opened by ap-- over 4 years ago

#49 - add osx-app-shim example

Pull Request - State: closed - Opened by ap-- over 4 years ago - 1 comment

#48 - Qpzip and open

Pull Request - State: closed - Opened by ap-- over 4 years ago - 2 comments

#47 - Can't from paquo.projects import QuPathProject

Issue - State: closed - Opened by trinhvg over 4 years ago - 3 comments

#46 - docs need updating due to switch to conda-devenv

Issue - State: closed - Opened by ap-- over 4 years ago

#45 - Discussing repr

Issue - State: closed - Opened by sdvillal over 4 years ago - 1 comment

#44 - Add info output regarding QuPath version

Issue - State: closed - Opened by ap-- over 4 years ago

#43 - Cannot save annotations to images on a smb network share

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment

#42 - Support and/or recommend a coding style for cell-based environments

Issue - State: open - Opened by ap-- over 4 years ago - 2 comments
Labels: documentation, enhancement

#41 - Docs need to be updated with new `mode` setting

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment
Labels: documentation

#40 - Project hotloading in qupath

Issue - State: open - Opened by ap-- over 4 years ago - 2 comments
Labels: enhancement

#39 - Hierarchy update not propagating

Issue - State: closed - Opened by ap-- over 4 years ago - 2 comments
Labels: bug, invalid

#38 - Try to detect if somethings wrong with the provided project

Issue - State: open - Opened by ap-- over 4 years ago

#37 - Implement readonly mode

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment
Labels: enhancement

#36 - Decide on default QuPathProject mode

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment

#35 - QuPathColor from None crashes

Issue - State: closed - Opened by ap-- over 4 years ago

#34 - Explore scripts in projects

Issue - State: open - Opened by ap-- over 4 years ago - 1 comment

#33 - Request for input on direction for JPype

Issue - State: open - Opened by Thrameos over 4 years ago - 3 comments

#32 - Tiff files with `WxH > signed int 32` don't work under macos

Issue - State: open - Opened by ap-- over 4 years ago - 5 comments
Labels: bug

#31 - Cleanup Project folder when project is not saved?

Issue - State: closed - Opened by ap-- over 4 years ago - 2 comments
Labels: wontfix

#30 - Image files that require thumbnail resampling take long time to add

Issue - State: closed - Opened by ap-- over 4 years ago - 22 comments
Labels: bug

#29 - typos in Readme

Issue - State: closed - Opened by fmonta over 4 years ago - 1 comment

#28 - Explain paquo configuration

Issue - State: closed - Opened by ap-- over 4 years ago - 2 comments
Labels: documentation

#27 - Provide better JAVA_OPTS defaults

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment
Labels: bug

#26 - Relax python requirement to 3.6+

Issue - State: closed - Opened by ap-- over 4 years ago

#25 - Allow providing JAVA_OPTS to JVM

Issue - State: closed - Opened by ap-- over 4 years ago - 3 comments
Labels: bug

#24 - Move tool configurations to pyproject.toml

Issue - State: open - Opened by ap-- over 4 years ago - 1 comment

#23 - Windows: image file delete impossible after adding it to project when using Bioformats

Issue - State: open - Opened by ap-- over 4 years ago - 9 comments
Labels: bug

#22 - Show Heatmaps with per pixel information

Issue - State: open - Opened by ap-- over 4 years ago
Labels: enhancement

#21 - Polish repo README

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment

#20 - Deploy paquo to pypi

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment

#19 - Test paquo against other QuPath versions

Issue - State: open - Opened by ap-- over 4 years ago - 1 comment

#18 - Provide custom colormaps for measurements

Issue - State: open - Opened by ap-- over 4 years ago - 1 comment
Labels: enhancement

#17 - Make paquo check the qupath version at import

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment

#16 - QuPath's URIs vs pathlib.Path.as_uri()

Issue - State: closed - Opened by ap-- over 4 years ago - 2 comments

#15 - Image Metadata confusion

Issue - State: open - Opened by ap-- over 4 years ago

#14 - Term normalization and color consistency for PathClasses

Issue - State: open - Opened by ap-- over 4 years ago
Labels: enhancement

#13 - Provide functionality to move image files to faster locations ("cache hierarchy")

Issue - State: open - Opened by ap-- over 4 years ago - 9 comments
Labels: enhancement

#12 - Query image sections via annotations

Issue - State: open - Opened by ap-- over 4 years ago
Labels: enhancement

#11 - Allow adding detections to images (special type of pathobjects)

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment
Labels: enhancement

#10 - Allow updating image URIs

Issue - State: closed - Opened by ap-- over 4 years ago - 1 comment
Labels: enhancement

#9 - Display and manage heatmaps

Issue - State: closed - Opened by ap-- over 4 years ago - 8 comments
Labels: enhancement

#8 - Generate projects with pre-filled metadata

Issue - State: closed - Opened by sdvillal over 4 years ago - 3 comments
Labels: enhancement

#7 - Control qupath interactively from python

Issue - State: open - Opened by sdvillal over 4 years ago - 9 comments
Labels: enhancement

#6 - Develop

Pull Request - State: closed - Opened by sdvillal over 4 years ago - 2 comments

#5 - Generate docs

Issue - State: closed - Opened by ap-- over 4 years ago - 5 comments
Labels: documentation

#4 - all things paquo should be able to do

Issue - State: closed - Opened by ap-- over 4 years ago - 3 comments

#3 - Provide simple way to configure paquo's settings

Issue - State: closed - Opened by ap-- over 4 years ago - 4 comments
Labels: enhancement

#2 - paquo's naming convention for java and python

Issue - State: closed - Opened by ap-- over 4 years ago - 4 comments

#1 - Decide on versioning schema

Issue - State: closed - Opened by sdvillal over 4 years ago - 4 comments