bayer-group/cellenium issues and pull requests

#46 - cleanup

Pull Request - State: closed - Opened by carsten-jahn 11 months ago

#45 - Develop

Pull Request - State: closed - Opened by carsten-jahn 11 months ago

#44 - Bump postcss from 8.4.24 to 8.4.31 in /client

Pull Request - State: open - Opened by dependabot[bot] 12 months ago
Labels: dependencies

#43 - Bump graphql from 16.6.0 to 16.8.1 in /client

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#42 - Bump @adobe/css-tools from 4.0.1 to 4.3.1 in /client

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#41 - Bump vega-functions from 5.13.0 to 5.13.2 in /client

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#40 - Aws study import

Pull Request - State: closed - Opened by carsten-jahn about 1 year ago

#39 - Bump word-wrap from 1.2.3 to 1.2.4 in /client

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#38 - Bump semver from 6.3.0 to 6.3.1 in /postgraphile

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#37 - Bump semver from 6.3.0 to 6.3.1 in /client

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#36 - Bump tough-cookie from 4.1.2 to 4.1.3 in /client

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#35 - expression plots: show amount of samples next to the boxes / violins

Issue - State: open - Opened by carsten-jahn over 1 year ago

#34 - expression plots: option to combine 'equivalent' annotations in one category

Issue - State: open - Opened by carsten-jahn over 1 year ago

#33 - cross-study heatmap should differentiate "low expression" vs. "cell type not measured at all in this study"

Issue - State: closed - Opened by carsten-jahn over 1 year ago - 1 comment

#32 - extend gene IDs, symbols, descriptions with further species

Issue - State: open - Opened by carsten-jahn over 1 year ago

#31 - Bump webpack from 5.75.0 to 5.76.1 in /client

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#30 - multi omics to main

Pull Request - State: closed - Opened by carsten-jahn over 1 year ago

#29 - small support python package for study preparation

Issue - State: open - Opened by carsten-jahn over 1 year ago

#28 - study list filter: search for words in title, description; Pubmed ID

Issue - State: closed - Opened by carsten-jahn over 1 year ago - 1 comment

#27 - Bump vega from 5.22.1 to 5.23.0 in /client

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#26 - Bump vega-functions from 5.13.0 to 5.13.1 in /client

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#25 - user-defined cell annotations: no DEG calculation for multi-omics (h5mu) studies

Issue - State: open - Opened by carsten-jahn over 1 year ago

#24 - multiple data layers (e.g. another matrix with imputed values)

Issue - State: open - Opened by carsten-jahn over 1 year ago
Labels: enhancement

#23 - log of pvalues = 0 is inf, so they are not shown in volcano plot

Issue - State: open - Opened by andreassteffen over 1 year ago

#22 - for generated cell types using the user annotation the generated DEGs are not shown

Issue - State: closed - Opened by andreassteffen over 1 year ago

#21 - user requested gene correlation does not yet work for multiomics

Issue - State: open - Opened by andreassteffen over 1 year ago

#20 - clustering for the rna part of the PBMC citeSeq data set looks wrong although correct in jupyter

Issue - State: closed - Opened by andreassteffen over 1 year ago - 1 comment

#19 - Develop

Pull Request - State: closed - Opened by carsten-jahn over 1 year ago

#18 - Bump undici from 5.14.0 to 5.19.1 in /client

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#17 - display species in study overview card

Issue - State: closed - Opened by carsten-jahn over 1 year ago

#16 - remove annotation select in user annotation view

Issue - State: closed - Opened by andreassteffen over 1 year ago

#15 - add CITE-Seq and ATAC-Seq studies

Issue - State: closed - Opened by andreassteffen over 1 year ago - 1 comment

#14 - user prepared study upload

Issue - State: closed - Opened by andreassteffen over 1 year ago

#13 - filter studies before fetching data for cross-study view, e.g. filter by tissue

Issue - State: closed - Opened by andreassteffen over 1 year ago

#12 - user annotation coexpression plot should show a (0,0) sample for selecting this case

Issue - State: closed - Opened by andreassteffen over 1 year ago

#11 - make the autocomplete nicer so they show the ontology type

Issue - State: closed - Opened by andreassteffen over 1 year ago

#10 - enable filtering by cell ontology and species

Issue - State: closed - Opened by andreassteffen over 1 year ago

#9 - align ts-vector vs ts-query dictionary (e.g. mouse)

Issue - State: closed - Opened by andreassteffen over 1 year ago

#8 - make the correlation values of pairwise scatter and correlation mining correspond (do not remove 0)

Issue - State: closed - Opened by andreassteffen over 1 year ago

#7 - scale violinplot down to 100% of availabe space

Issue - State: closed - Opened by andreassteffen over 1 year ago - 1 comment

#6 - color change of selected annotation group after gene expression is plotted on top (e.g. pancreas data set, with CellO CD14-positive and VCAN gene)

Issue - State: closed - Opened by andreassteffen over 1 year ago

#5 - open task prior to release

Issue - State: closed - Opened by andreassteffen over 1 year ago

#4 - Develop

Pull Request - State: closed - Opened by carsten-jahn over 1 year ago

#3 - docs, add optional row-level security on study level

Pull Request - State: closed - Opened by carsten-jahn over 1 year ago

#2 - frontend in docker

Pull Request - State: closed - Opened by carsten-jahn over 1 year ago

#1 - Develop

Pull Request - State: closed - Opened by carsten-jahn over 1 year ago

GitHub / bayer-group/cellenium issues and pull requests