Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / bartongroup/ProteoFAV issues and pull requests

#56 - PDBe REST api now (v1.8) provides uniprot_canonical flag

Issue - State: open - Opened by tbrittoborges almost 6 years ago
Labels: enhancement

#55 - Downloader should accept a file object

Issue - State: open - Opened by tbrittoborges over 6 years ago
Labels: enhancement

#54 - Check over Chimera module again.

Issue - State: open - Opened by stuartmac over 6 years ago

#53 - Add biological question/answer narrative to example notebook

Issue - State: open - Opened by stuartmac over 6 years ago - 1 comment

#52 - Jalview workflow example

Issue - State: open - Opened by stuartmac over 6 years ago

#51 - Adding VCF parsing/loading for using with gnomAD variants

Issue - State: open - Opened by biomadeira over 6 years ago
Labels: enhancement

#50 - Development Branch

Pull Request - State: closed - Opened by biomadeira over 6 years ago

#49 - Methods to work with multiple sequence alignments

Issue - State: closed - Opened by biomadeira over 6 years ago - 1 comment
Labels: enhancement

#48 - Methods to export to chimera command file?

Issue - State: closed - Opened by biomadeira over 6 years ago - 2 comments
Labels: enhancement

#46 - Development Branch

Pull Request - State: closed - Opened by biomadeira over 6 years ago

#45 - Developing a more modular approach

Issue - State: open - Opened by biomadeira almost 7 years ago - 1 comment
Labels: enhancement

#44 - Improve column types checking

Issue - State: closed - Opened by biomadeira almost 7 years ago - 1 comment
Labels: enhancement

#43 - Added missing tests for config.py

Pull Request - State: closed - Opened by biomadeira almost 7 years ago - 1 comment

#42 - fix multiline string causing problems in the test.

Pull Request - State: closed - Opened by tbrittoborges almost 7 years ago

#41 - Structures 5uyx/5uyz/4abo are not parsed correctly

Issue - State: closed - Opened by biomadeira almost 7 years ago - 1 comment
Labels: bug

#40 - Python 3 support

Issue - State: closed - Opened by tbrittoborges almost 7 years ago - 1 comment
Labels: enhancement

#39 - Feature: arguments and installation with Click

Pull Request - State: closed - Opened by tbrittoborges almost 7 years ago

#38 - Feature chimera

Pull Request - State: closed - Opened by tbrittoborges over 7 years ago

#37 - Fabio

Pull Request - State: closed - Opened by biomadeira over 7 years ago - 1 comment

#36 - Methods not used anywhere - what to do about them?

Issue - State: closed - Opened by biomadeira over 7 years ago - 1 comment
Labels: question

#35 - check_sequence='warn'

Issue - State: open - Opened by tbrittoborges over 7 years ago
Labels: bug, enhancement

#34 - Merging updates made to master onto "fabio" branch

Pull Request - State: closed - Opened by biomadeira over 7 years ago

#33 - Hierarchical Edge Bundling visualisation

Issue - State: closed - Opened by tbrittoborges over 7 years ago - 1 comment
Labels: enhancement

#32 - Add a visualisation function to plot number of variants on proteins

Issue - State: open - Opened by tbrittoborges almost 8 years ago
Labels: enhancement

#31 - Merge table would be better represented as a Class

Issue - State: closed - Opened by tbrittoborges about 8 years ago - 1 comment
Labels: enhancement

#30 - Minor fixes

Pull Request - State: closed - Opened by biomadeira about 8 years ago

#29 - Improved the way in which the values are populated and updated, so th…

Pull Request - State: closed - Opened by biomadeira about 8 years ago

#27 - Update merge tables to work with biounits

Issue - State: closed - Opened by biomadeira about 8 years ago - 2 comments

#26 - Test for merge tables with assembly units

Issue - State: closed - Opened by tbrittoborges about 8 years ago - 2 comments

#25 - Simplified the biological unit methods so that it downloads these fro…

Pull Request - State: closed - Opened by biomadeira about 8 years ago - 1 comment

#24 - Test for merge_tables and all atoms

Issue - State: closed - Opened by tbrittoborges about 8 years ago - 1 comment

#23 - Improved the sifts parsing method to get regions information straight…

Pull Request - State: closed - Opened by biomadeira about 8 years ago - 1 comment

#22 - Fabio's refact

Pull Request - State: closed - Opened by biomadeira about 8 years ago - 1 comment

#21 - Merge table refac

Pull Request - State: closed - Opened by biomadeira about 8 years ago

#20 - check_sequence uniprot and ensembl variants

Issue - State: open - Opened by tbrittoborges about 8 years ago

#19 - merge_table_refac

Pull Request - State: closed - Opened by tbrittoborges over 8 years ago - 1 comment

#18 - Merge table refac

Pull Request - State: closed - Opened by tbrittoborges over 8 years ago - 1 comment

#17 - Design decision in _fetch_uniprot_variants

Issue - State: open - Opened by tbrittoborges over 8 years ago
Labels: question

#16 - Use coverage.py to detected dead functions

Issue - State: closed - Opened by tbrittoborges over 8 years ago

#14 - Logging config

Issue - State: closed - Opened by tbrittoborges over 8 years ago - 2 comments

#13 - Stuart

Pull Request - State: closed - Opened by stuartmac over 8 years ago - 1 comment

#12 - Let's merge branches a put it in production?

Issue - State: closed - Opened by tbrittoborges over 8 years ago - 4 comments

#11 - Stuart

Pull Request - State: closed - Opened by stuartmac over 8 years ago

#10 - Found a bug

Issue - State: closed - Opened by tbrittoborges over 8 years ago - 3 comments
Labels: Label1

#9 - Found a bug3

Issue - State: closed - Opened by tbrittoborges over 8 years ago
Labels: Label2, asdasd

#8 - Found a bug2

Issue - State: closed - Opened by tbrittoborges over 8 years ago
Labels: Label2, asdasd

#7 - Found a bug

Issue - State: closed - Opened by tbrittoborges over 8 years ago
Labels: Label1, Label2

#6 - Stuart

Pull Request - State: closed - Opened by stuartmac over 8 years ago - 2 comments

#5 - Stuart

Pull Request - State: closed - Opened by stuartmac over 8 years ago

#4 - Stuart

Pull Request - State: closed - Opened by stuartmac over 8 years ago - 5 comments

#3 - Refactoring branch to master

Pull Request - State: closed - Opened by biomadeira over 8 years ago

#2 - Stuart

Pull Request - State: closed - Opened by stuartmac over 8 years ago - 5 comments

#1 - ValueError: 3a5o|C Cif and DSSP files have diffent sequences.

Issue - State: closed - Opened by tbrittoborges almost 9 years ago