Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / baderlab/scclustviz issues and pull requests

#52 - Updated Ubuntu & R, unable to runShiny()

Issue - State: closed - Opened by alexwskh about 1 year ago - 4 comments

#51 - Problem accessing DR embeddings in Seurat object

Issue - State: closed - Opened by retropc66 almost 2 years ago - 1 comment

#50 - runShiny not working

Issue - State: closed - Opened by ccnawrocki over 2 years ago - 4 comments

#49 - Installation error: syntax issue in deTest.R line 180

Issue - State: closed - Opened by EDePasquale over 2 years ago - 1 comment

#48 - Dev

Pull Request - State: closed - Opened by innesbre about 3 years ago

#47 - A question on using scClustViz on integrated data (Seurat)

Issue - State: closed - Opened by martinfalck over 3 years ago - 2 comments

#46 - Capitalization for embeddings needs fixing

Issue - State: closed - Opened by innesbre over 3 years ago

#45 - Error in get(lfc[X])[[1]] : subscript out of bounds

Issue - State: closed - Opened by ankushs0128 about 4 years ago - 2 comments

#42 - Are GOI plots ordered by expression?

Issue - State: open - Opened by innesbre over 4 years ago

#41 - Is there a size limit?

Issue - State: closed - Opened by iiiir over 4 years ago - 1 comment

#40 - Error in validObject(.Object) while running CalcAllSCV

Issue - State: closed - Opened by KabitaBaral1 almost 5 years ago - 1 comment

#39 - Weird Shiny bugs when using seurat v1 input files.

Issue - State: open - Opened by innesbre almost 5 years ago - 2 comments
Labels: bug

#38 - DE by GUI fails - unselected set to NA, breaks indexing of sparse matrices

Issue - State: closed - Opened by innesbre almost 5 years ago - 1 comment
Labels: bug

#37 - Dotplot Labels

Issue - State: open - Opened by 14zac2 about 5 years ago
Labels: bug

#36 - Add table save for mdFactorData

Pull Request - State: closed - Opened by gaelder about 5 years ago - 2 comments

#35 - Better file names for GOI overlay plots

Issue - State: closed - Opened by gaelder over 5 years ago - 1 comment

#34 - Parameters for sctransform based data

Issue - State: closed - Opened by knokknok over 5 years ago - 1 comment

#33 - spreadLabels2 for cell projection

Issue - State: closed - Opened by innesbre over 5 years ago
Labels: enhancement

#32 - Support visualizing other DR methods (UMAP, PCA, etc)

Issue - State: closed - Opened by innesbre over 5 years ago
Labels: enhancement

#31 - Colour MA plot by FDR

Issue - State: closed - Opened by innesbre over 5 years ago
Labels: enhancement

#30 - seurat v3 concerns again

Issue - State: closed - Opened by whtns over 5 years ago - 1 comment

#29 - Add testing and coverage reporting

Issue - State: open - Opened by innesbre over 5 years ago
Labels: enhancement

#28 - Reduce number of warnings returned to console by Shiny

Issue - State: open - Opened by innesbre over 5 years ago - 2 comments
Labels: bug

#27 - Compatibility with Seurat v3?

Issue - State: closed - Opened by whtns almost 6 years ago - 7 comments

#27 - Compatibility with Seurat v3?

Issue - State: closed - Opened by whtns almost 6 years ago - 7 comments

#26 - Embrace Shiny modular design

Issue - State: open - Opened by innesbre almost 6 years ago
Labels: long-term

#25 - error reading Seurat object

Issue - State: closed - Opened by nbahlis about 6 years ago - 1 comment

#24 - Labels missing from MA plot

Issue - State: closed - Opened by innesbre about 6 years ago
Labels: bug

#23 - Save as PDF buttons

Issue - State: closed - Opened by innesbre about 6 years ago - 2 comments
Labels: enhancement

#22 - Volcano plots

Issue - State: closed - Opened by innesbre about 6 years ago
Labels: enhancement

#21 - Biaxial plot of genes' expression per cell?

Issue - State: open - Opened by innesbre about 6 years ago
Labels: enhancement

#20 - Marker combinations?

Issue - State: open - Opened by innesbre about 6 years ago - 2 comments
Labels: enhancement

#19 - Fx to pass your own DE results

Issue - State: closed - Opened by innesbre about 6 years ago
Labels: enhancement

#18 - GUI for subsetting cells for reclustering?

Issue - State: closed - Opened by innesbre about 6 years ago - 1 comment
Labels: enhancement

#18 - GUI for subsetting cells for reclustering?

Issue - State: closed - Opened by innesbre about 6 years ago - 1 comment
Labels: enhancement

#17 - End Shiny session when browser window is closed

Issue - State: closed - Opened by innesbre about 6 years ago - 1 comment
Labels: enhancement

#16 - ERROR: dependency ‘TeachingDemos’

Issue - State: closed - Opened by alextamburino about 6 years ago - 2 comments

#15 - Cluster numbers ordered correctly

Issue - State: closed - Opened by innesbre about 6 years ago - 1 comment
Labels: bug

#14 - Automated SCE reading

Issue - State: closed - Opened by AgingMuscleMU about 6 years ago
Labels: enhancement

#13 - Silhouette plot cluster labels

Issue - State: open - Opened by innesbre about 6 years ago
Labels: bug

#12 - Dot painting in cell selection plot occasionally goes wacky.

Issue - State: closed - Opened by innesbre about 6 years ago
Labels: bug

#11 - Clicking non-existent plot results in crash.

Issue - State: closed - Opened by innesbre about 6 years ago - 1 comment
Labels: bug

#10 - Open default res automatically

Issue - State: closed - Opened by RetinaSCMU about 6 years ago
Labels: enhancement

#9 - Select cells for selDE using metadata

Issue - State: closed - Opened by innesbre about 6 years ago - 3 comments
Labels: enhancement

#8 - Colour cells by silhouette width?

Issue - State: closed - Opened by innesbre about 6 years ago - 1 comment
Labels: enhancement

#7 - clustWiseDEtest fails when < 3 clusters in a resolution?

Issue - State: closed - Opened by innesbre about 6 years ago - 1 comment
Labels: bug

#6 - Fx to pass custom deVS and generate deMarker/deNeighb?

Issue - State: closed - Opened by innesbre about 6 years ago - 2 comments
Labels: enhancement

#5 - Memory doubling?

Issue - State: open - Opened by innesbre about 6 years ago
Labels: question

#4 - Todo list for v0.30

Issue - State: closed - Opened by innesbre about 6 years ago
Labels: enhancement

#3 - Dev

Pull Request - State: closed - Opened by innesbre over 6 years ago

#2 - De by fdr

Pull Request - State: closed - Opened by innesbre over 7 years ago

#1 - De by fdr

Pull Request - State: closed - Opened by innesbre over 7 years ago