Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / baderlab/enrichmentmapapp issues and pull requests

#497 - Bump jackson-databind from 2.2.2 to 2.13.4.1 in /EnrichmentMapPlugin

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#496 - cytoscape Enrichment Map no responce

Issue - State: closed - Opened by ChaoWilliam about 2 years ago - 1 comment

#496 - cytoscape Enrichment Map no responce

Issue - State: closed - Opened by ChaoWilliam about 2 years ago - 1 comment

#493 - Add ability to create subnetwork from visible nodes.

Issue - State: closed - Opened by mikekucera about 2 years ago - 1 comment
Labels: enhancement

#493 - Add ability to create subnetwork from visible nodes.

Issue - State: closed - Opened by mikekucera about 2 years ago - 1 comment
Labels: enhancement

#492 - Issue using enrichment map columns in Cytoscape formula builder

Issue - State: closed - Opened by risserlin over 2 years ago - 3 comments
Labels: bug

#492 - Issue using enrichment map columns in Cytoscape formula builder

Issue - State: closed - Opened by risserlin over 2 years ago - 3 comments
Labels: bug

#490 - July gene sets (at least the Human ones) are missing the genes

Issue - State: closed - Opened by toddajohnson over 2 years ago - 2 comments

#490 - July gene sets (at least the Human ones) are missing the genes

Issue - State: closed - Opened by toddajohnson over 2 years ago - 2 comments

#489 - g:profiler not running

Issue - State: closed - Opened by risserlin over 2 years ago - 11 comments
Labels: bug

#489 - g:profiler not running

Issue - State: closed - Opened by risserlin over 2 years ago - 11 comments
Labels: bug

#488 - Change "Fill Color" only change the edge color not node color

Issue - State: closed - Opened by Zejian-Wang over 2 years ago - 2 comments

#488 - Change "Fill Color" only change the edge color not node color

Issue - State: closed - Opened by Zejian-Wang over 2 years ago - 2 comments

#487 - Bump gson from 2.8.0 to 2.8.9 in /EnrichmentMapPlugin

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#487 - Bump gson from 2.8.0 to 2.8.9 in /EnrichmentMapPlugin

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#486 - Enrichmentmap combine datasets from R

Issue - State: closed - Opened by alievakrash over 2 years ago - 8 comments

#486 - Enrichmentmap combine datasets from R

Issue - State: closed - Opened by alievakrash over 2 years ago - 8 comments

#485 - Failed installation from App Manager

Issue - State: closed - Opened by thielde over 2 years ago - 2 comments

#485 - Failed installation from App Manager

Issue - State: closed - Opened by thielde over 2 years ago - 2 comments

#484 - Bump logback-core from 0.9.29 to 1.2.9 in /EnrichmentMapIntegrationTest

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#484 - Bump logback-core from 0.9.29 to 1.2.9 in /EnrichmentMapIntegrationTest

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#483 - Bump jackson-databind from 2.2.2 to 2.12.6.1 in /EnrichmentMapPlugin

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#483 - Bump jackson-databind from 2.2.2 to 2.12.6.1 in /EnrichmentMapPlugin

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#482 - EM session not restoring after save

Issue - State: closed - Opened by risserlin over 2 years ago - 10 comments
Labels: bug

#482 - EM session not restoring after save

Issue - State: closed - Opened by risserlin over 2 years ago - 10 comments
Labels: bug

#478 - EnrichmentMap - show in pathway commons Functionality - Better documentation needed

Issue - State: open - Opened by risserlin over 2 years ago - 1 comment
Labels: enhancement

#478 - EnrichmentMap - show in pathway commons Functionality - Better documentation needed

Issue - State: open - Opened by risserlin over 2 years ago - 1 comment
Labels: enhancement

#477 - Bump apache-karaf from 4.2.1 to 4.3.6 in /EnrichmentMapIntegrationTest

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#477 - Bump apache-karaf from 4.2.1 to 4.3.6 in /EnrichmentMapIntegrationTest

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#472 - Bump jackson-databind from 2.2.2 to 2.9.10.8 in /EnrichmentMapPlugin

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#472 - Bump jackson-databind from 2.2.2 to 2.9.10.8 in /EnrichmentMapPlugin

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#465 - Bump logback-core from 0.9.29 to 1.2.0 in /EnrichmentMapIntegrationTest

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#465 - Bump logback-core from 0.9.29 to 1.2.0 in /EnrichmentMapIntegrationTest

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#461 - using enrichment map for GSEA result

Issue - State: closed - Opened by SunYYQQ over 3 years ago - 12 comments

#461 - using enrichment map for GSEA result

Issue - State: closed - Opened by SunYYQQ over 3 years ago - 12 comments

#459 - What is the difference between EnrichmentMap::Genes and EnrichmentMap::Enrichment_Genes

Issue - State: closed - Opened by risserlin over 3 years ago - 1 comment
Labels: question

#459 - What is the difference between EnrichmentMap::Genes and EnrichmentMap::Enrichment_Genes

Issue - State: closed - Opened by risserlin over 3 years ago - 1 comment
Labels: question

#456 - Update the read the docs tutorial to use updated GSEA data

Issue - State: closed - Opened by risserlin over 3 years ago - 2 comments
Labels: docs

#456 - Update the read the docs tutorial to use updated GSEA data

Issue - State: closed - Opened by risserlin over 3 years ago - 2 comments
Labels: docs

#444 - GREAT with multiple datasets: only 1 node table column containing gene set size

Issue - State: closed - Opened by veroniquevoisin almost 4 years ago - 4 comments
Labels: enhancement

#444 - GREAT with multiple datasets: only 1 node table column containing gene set size

Issue - State: closed - Opened by veroniquevoisin almost 4 years ago - 4 comments
Labels: enhancement

#431 - Single Cell: Enrichment panel is reset (blank) after saving and reloading EM

Issue - State: closed - Opened by s2hui about 4 years ago - 9 comments

#431 - Single Cell: Enrichment panel is reset (blank) after saving and reloading EM

Issue - State: closed - Opened by s2hui about 4 years ago - 9 comments

#427 - Show in Pathway Commons is not working

Issue - State: closed - Opened by s2hui about 4 years ago - 12 comments

#427 - Show in Pathway Commons is not working

Issue - State: closed - Opened by s2hui about 4 years ago - 12 comments

#424 - EM post analysis: all nodes get selected even if only one signature gene-set is selected

Issue - State: closed - Opened by veroniquevoisin about 4 years ago - 1 comment
Labels: bug

#424 - EM post analysis: all nodes get selected even if only one signature gene-set is selected

Issue - State: closed - Opened by veroniquevoisin about 4 years ago - 1 comment
Labels: bug

#412 - Add notebook demonstrating how to use fgsea with EM

Issue - State: open - Opened by risserlin over 4 years ago - 6 comments
Labels: enhancement

#412 - Add notebook demonstrating how to use fgsea with EM

Issue - State: open - Opened by risserlin over 4 years ago - 6 comments
Labels: enhancement

#410 - Multi dataset documentation

Issue - State: open - Opened by risserlin over 4 years ago
Labels: docs

#410 - Multi dataset documentation

Issue - State: open - Opened by risserlin over 4 years ago
Labels: docs

#392 - EMap 3.1.0 - Fill colour customization gets overwritten

Issue - State: closed - Opened by shraddhapai almost 5 years ago - 1 comment

#392 - EMap 3.1.0 - Fill colour customization gets overwritten

Issue - State: closed - Opened by shraddhapai almost 5 years ago - 1 comment

#386 - Bump apache-karaf from 4.2.1 to 4.2.3 in /EnrichmentMapIntegrationTest

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#386 - Bump apache-karaf from 4.2.1 to 4.2.3 in /EnrichmentMapIntegrationTest

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#375 - Providing information about the license EnrichmentMapApp is under

Issue - State: closed - Opened by Alex-Temny over 5 years ago - 1 comment

#375 - Providing information about the license EnrichmentMapApp is under

Issue - State: closed - Opened by Alex-Temny over 5 years ago - 1 comment

#344 - Change node border color/width in the default one dataset analysis

Issue - State: open - Opened by risserlin over 6 years ago
Labels: bug

#344 - Change node border color/width in the default one dataset analysis

Issue - State: open - Opened by risserlin over 6 years ago
Labels: bug

#331 - Publication-Ready should only remove gene-set labels but not revert manually defined style

Issue - State: closed - Opened by veroniquevoisin over 6 years ago - 3 comments
Labels: bug

#331 - Publication-Ready should only remove gene-set labels but not revert manually defined style

Issue - State: closed - Opened by veroniquevoisin over 6 years ago - 3 comments
Labels: bug

#265 - EM 3.0 testing with DAVID output

Issue - State: closed - Opened by veroniquevoisin about 7 years ago - 3 comments
Labels: enhancement

#265 - EM 3.0 testing with DAVID output

Issue - State: closed - Opened by veroniquevoisin about 7 years ago - 3 comments
Labels: enhancement

#245 - Set different threshold for different datasets

Issue - State: open - Opened by risserlin over 7 years ago
Labels: enhancement

#245 - Set different threshold for different datasets

Issue - State: open - Opened by risserlin over 7 years ago
Labels: enhancement

#225 - Special characters in pathway names not recognized by EM3

Issue - State: closed - Opened by drseamonster over 7 years ago - 5 comments
Labels: bug

#225 - Special characters in pathway names not recognized by EM3

Issue - State: closed - Opened by drseamonster over 7 years ago - 5 comments
Labels: bug

#224 - Should slider be analgous to one in the EM creation window

Issue - State: closed - Opened by risserlin over 7 years ago - 2 comments
Labels: enhancement

#224 - Should slider be analgous to one in the EM creation window

Issue - State: closed - Opened by risserlin over 7 years ago - 2 comments
Labels: enhancement

#186 - annotate genesets with gene names

Issue - State: closed - Opened by risserlin over 7 years ago - 1 comment
Labels: enhancement

#186 - annotate genesets with gene names

Issue - State: closed - Opened by risserlin over 7 years ago - 1 comment
Labels: enhancement

#185 - Creating enrichment map from cyrest with expression file with NA value fails

Issue - State: closed - Opened by risserlin over 7 years ago
Labels: bug

#185 - Creating enrichment map from cyrest with expression file with NA value fails

Issue - State: closed - Opened by risserlin over 7 years ago
Labels: bug

#165 - Commands for post-analysis signature discovery

Issue - State: closed - Opened by mikekucera about 8 years ago - 1 comment
Labels: enhancement, PostAnalaysis

#165 - Commands for post-analysis signature discovery

Issue - State: closed - Opened by mikekucera about 8 years ago - 1 comment
Labels: enhancement, PostAnalaysis