baccuslab/pyret issues and pull requests

#98 - Changes filtering method in firing-rate estimation routines.

Pull Request - State: closed - Opened by bnaecker over 6 years ago - 1 comment

#97 - Bug fix in linear response method.

Pull Request - State: closed - Opened by bnaecker almost 7 years ago - 1 comment

#96 - Linear-response function is wrong

Issue - State: closed - Opened by bnaecker almost 7 years ago
Labels: bug

#95 - Adds option to all visualizations which display spatial filters to

Pull Request - State: closed - Opened by bnaecker almost 7 years ago - 2 comments

#94 - RBF nonlinearity

Pull Request - State: closed - Opened by nirum over 7 years ago - 1 comment

#93 - Metadata

Pull Request - State: closed - Opened by nirum over 7 years ago - 1 comment

#92 - Changes testing strategy for the visualization module.

Pull Request - State: closed - Opened by bnaecker over 7 years ago - 1 comment

#91 - Best way to fix failing tests

Issue - State: closed - Opened by bnaecker over 7 years ago - 5 comments
Labels: discussion

#90 - fixing bug in nonlinearities.Sigmoid

Pull Request - State: closed - Opened by lmcintosh over 7 years ago

#89 - Updating paper structure and references for JOSS submission.

Pull Request - State: closed - Opened by arfon almost 8 years ago - 1 comment

#88 - JOSS review: demo errors

Issue - State: closed - Opened by kdesimone almost 8 years ago - 1 comment

#87 - PR for Python 2.7 support

Pull Request - State: closed - Opened by bnaecker almost 8 years ago - 2 comments

#86 - JOSS review: demo broken, related to h5py?

Issue - State: closed - Opened by kdesimone almost 8 years ago - 1 comment

#85 - JOSS review: pip requirements not installing?

Issue - State: closed - Opened by kdesimone almost 8 years ago - 4 comments

#84 - Nuisance regression / denoising

Issue - State: closed - Opened by kdesimone almost 8 years ago

#83 - Support for Python 2.7?

Issue - State: closed - Opened by kdesimone almost 8 years ago - 6 comments

#82 - Acausal

Pull Request - State: closed - Opened by bnaecker almost 8 years ago - 1 comment

#81 - add v0.5 updates to the changelog

Issue - State: closed - Opened by nirum almost 8 years ago - 3 comments
Labels: documentation

#80 - Delete demo folder

Issue - State: closed - Opened by bnaecker almost 8 years ago - 1 comment

#79 - Adds really basic tests for spikingevent

Pull Request - State: closed - Opened by nirum almost 8 years ago - 1 comment

#78 - Renames some plotting functions to use _ between words, more in line

Pull Request - State: closed - Opened by bnaecker almost 8 years ago - 1 comment

#77 - Renames upsample_stim and downsample_stim

Pull Request - State: closed - Opened by nirum almost 8 years ago - 1 comment

#76 - Updated tutorial for the docs

Issue - State: closed - Opened by nirum about 8 years ago - 1 comment
Labels: enhancement

#75 - Add a models module?

Issue - State: open - Opened by nirum about 8 years ago
Labels: enhancement, discussion

#74 - Allowing playsta to save a movie to disk + display in ipython notebooks

Issue - State: closed - Opened by nirum about 8 years ago - 7 comments
Labels: enhancement

#73 - Add uncertainty estimates to nonlinearities

Issue - State: open - Opened by nirum about 8 years ago
Labels: enhancement

#72 - Add a module for simulating data

Issue - State: open - Opened by nirum about 8 years ago
Labels: enhancement

#71 - Adds a gaussian process (GP) regression nonlinearity.

Pull Request - State: closed - Opened by nirum over 8 years ago - 6 comments

#70 - changing the dev/master branch system

Issue - State: closed - Opened by nirum over 8 years ago - 3 comments
Labels: discussion

#69 - `stimulustools.slicestim` time axis is last, should be first

Issue - State: closed - Opened by bnaecker over 8 years ago - 1 comment

#68 - adding a module to generate noise and/or other stimuli

Issue - State: closed - Opened by nirum over 8 years ago - 2 comments
Labels: discussion

#67 - `rolling_window` should be in `pyret.stimulustools`, not `pyret.filtertools`

Issue - State: closed - Opened by nirum almost 9 years ago

#66 - filtertools.get_ellipse does not handle surrounds well

Issue - State: closed - Opened by nirum almost 9 years ago
Labels: bug

#65 - Release 0.4

Pull Request - State: closed - Opened by nirum almost 9 years ago

#64 - Version 0.4.0

Issue - State: closed - Opened by nirum almost 9 years ago - 4 comments
Labels: discussion

#63 - `rolling_window` rotates stimuli in the spatial dimension

Issue - State: closed - Opened by nirum almost 9 years ago - 2 comments

#62 - filtertools.decompose doesn't work when product of spatial dimensions < 42

Issue - State: closed - Opened by lmcintosh almost 9 years ago - 6 comments
Labels: bug

#61 - bug in visualizations.plotcells

Issue - State: closed - Opened by nirum about 9 years ago
Labels: bug

#60 - Custom classes for filters

Issue - State: closed - Opened by nirum about 9 years ago - 1 comment
Labels: enhancement

#59 - Add init.py to dev branch's new folder structure

Issue - State: closed - Opened by bnaecker about 9 years ago - 2 comments
Labels: enhancement

#58 - Flipped dimensions

Pull Request - State: closed - Opened by nirum about 9 years ago - 7 comments
Labels: enhancement

#57 - add clim flag to visualizations.playsta()

Pull Request - State: closed - Opened by lmcintosh over 9 years ago

#56 - Added clim flag to take a color limit in visualizations.getsta()

Pull Request - State: closed - Opened by lmcintosh over 9 years ago - 1 comment

#55 - visualizations.playsta enhancements

Issue - State: closed - Opened by lmcintosh over 9 years ago - 2 comments

#54 - visualizations.raster improvements

Issue - State: closed - Opened by lmcintosh over 9 years ago - 3 comments
Labels: enhancement

#53 - simplifying filtertools

Issue - State: closed - Opened by nirum over 9 years ago - 1 comment
Labels: enhancement

#52 - rolling_window

Issue - State: closed - Opened by nirum over 9 years ago

#51 - Dev

Pull Request - State: closed - Opened by bnaecker over 9 years ago - 1 comment

#50 - import bug

Issue - State: closed - Opened by nirum over 9 years ago
Labels: bug

#49 - no more underscores

Issue - State: closed - Opened by nirum over 9 years ago - 2 comments
Labels: question

#48 - HDF5 dataset support!

Issue - State: closed - Opened by nirum over 9 years ago - 1 comment
Labels: enhancement

#47 - Use `all` to determine what functions to export in different modules

Issue - State: closed - Opened by nirum over 9 years ago

#46 - Version 0.2.0: improved documentation

Pull Request - State: closed - Opened by nirum almost 10 years ago

#45 - remove `binary.py` from pyret?

Issue - State: closed - Opened by nirum almost 10 years ago - 1 comment
Labels: question

#44 - Poisson spike sampler

Issue - State: closed - Opened by nirum almost 10 years ago
Labels: enhancement

#43 - PEP8 style guidelines

Issue - State: closed - Opened by nirum almost 10 years ago
Labels: enhancement

#42 - demo: load experiment data file missing

Issue - State: closed - Opened by bongsoos almost 10 years ago - 2 comments
Labels: bug

#41 - documentation

Issue - State: closed - Opened by nirum almost 10 years ago - 3 comments
Labels: enhancement

#40 - pyret screenshots

Issue - State: closed - Opened by nirum almost 10 years ago - 1 comment

#39 - Add printing flag to stimulustools.getcov

Issue - State: closed - Opened by bnaecker almost 10 years ago

#38 - including flat to return tax in getsta

Issue - State: closed - Opened by pabloj100000 about 10 years ago
Labels: enhancement

#37 - Weird bug in lowranksta

Issue - State: closed - Opened by nirum about 10 years ago
Labels: bug

#36 - Bug in allocation of memory in `binary.readbin`

Issue - State: closed - Opened by nirum over 10 years ago
Labels: bug

#35 - Setup system

Issue - State: closed - Opened by pabloj100000 over 10 years ago - 1 comment
Labels: enhancement, wontfix

#34 - estnln potential bug

Issue - State: closed - Opened by pabloj100000 over 10 years ago - 1 comment
Labels: bug

#33 - to norm or not to norm?

Issue - State: closed - Opened by nirum over 10 years ago - 8 comments
Labels: question

#32 - Bug fixes

Pull Request - State: closed - Opened by nirum over 10 years ago

#31 - Estimate firing rate in Hz

Issue - State: closed - Opened by bnaecker over 10 years ago - 1 comment
Labels: bug, enhancement

#30 - Nonlinearities via firing rate

Issue - State: closed - Opened by bnaecker over 10 years ago - 1 comment
Labels: enhancement

#29 - Should `'filtertools.getste` multiply each stimulus frame by the number of spikes?

Issue - State: closed - Opened by bnaecker over 10 years ago - 1 comment
Labels: bug, question

#28 - Nonlinearities

Issue - State: closed - Opened by nirum over 10 years ago
Labels: enhancement

#27 - make time argument optional in `upsamplestim` and `downsamplestim`

Issue - State: closed - Opened by nirum over 10 years ago
Labels: enhancement

#26 - better visualization of RFs

Issue - State: closed - Opened by nirum over 10 years ago
Labels: enhancement

#25 - Example scripts

Issue - State: closed - Opened by bnaecker over 10 years ago - 1 comment

#24 - Standardize input/output argument order

Issue - State: closed - Opened by bnaecker over 10 years ago - 2 comments

#23 - Coding conventions

Issue - State: closed - Opened by bnaecker over 10 years ago - 1 comment

#22 - Issue decomposing spatiotemporal STAs

Issue - State: closed - Opened by bnaecker over 10 years ago - 1 comment
Labels: enhancement

#21 - problems with binspikes and estfr

Issue - State: closed - Opened by nirum over 10 years ago - 2 comments
Labels: bug

#20 - compute spike-triggered covariance (STC)

Issue - State: closed - Opened by nirum over 10 years ago
Labels: enhancement

#19 - Bug in time-flip of STE/STA arrays

Issue - State: closed - Opened by bnaecker over 10 years ago

#18 - fit2Dgaussian

Issue - State: closed - Opened by nirum over 10 years ago - 1 comment
Labels: question

#17 - docstrings

Issue - State: closed - Opened by nirum over 10 years ago - 1 comment

#16 - Flip STA/STE array

Issue - State: closed - Opened by bnaecker over 10 years ago

#15 - Bugs in visualizations module

Issue - State: closed - Opened by bnaecker over 10 years ago
Labels: bug

#14 - Reordering of stimulus dimensions in STA computation

Issue - State: closed - Opened by bnaecker over 10 years ago

#13 - SVD error in lowranksta

Issue - State: closed - Opened by bnaecker over 10 years ago

#12 - Clean up obsoletes from visualizations

Issue - State: closed - Opened by bnaecker over 10 years ago

#11 - TESTING

Issue - State: closed - Opened by bnaecker over 10 years ago - 6 comments

#10 - Remove obsoletes

Issue - State: closed - Opened by bnaecker over 10 years ago - 3 comments

#9 - Combine spikeTriggeredAnalysis.py and filtertools.py

Issue - State: closed - Opened by bnaecker over 10 years ago

#8 - Move ellipse fitting to filtertools, plotting to visualizations

Issue - State: closed - Opened by bnaecker over 10 years ago

#7 - Renaming

Issue - State: closed - Opened by bnaecker over 10 years ago - 4 comments

#6 - Allow binspikes in `spktools.py` to accept a time vector as an argument instead of a bin width

Issue - State: closed - Opened by nirum over 10 years ago
Labels: enhancement

#5 - viz module

Issue - State: closed - Opened by nirum over 10 years ago
Labels: enhancement

#4 - Dependencies?

Issue - State: closed - Opened by nirum over 10 years ago - 2 comments
Labels: question

#3 - Duplicate code

Issue - State: closed - Opened by nirum over 10 years ago

#2 - Update spktools module

Issue - State: closed - Opened by bnaecker over 10 years ago

#1 - Create Cell class

Issue - State: closed - Opened by bnaecker over 10 years ago - 4 comments

GitHub / baccuslab/pyret issues and pull requests