ay-lab/mustache issues and pull requests

#65 - Cool file balanced or not?

Issue - State: open - Opened by taojingfen 2 months ago

#64 - Track files not accessible

Issue - State: closed - Opened by stfacc 3 months ago - 1 comment

#63 - The reason why the number of loop is too small

Issue - State: open - Opened by ziyi10 4 months ago - 1 comment

#62 - error loading a .mcool file

Issue - State: open - Opened by alexandremarcil 5 months ago - 1 comment

#61 - installation error, Failed building wheel for hic-straw

Issue - State: open - Opened by jiangshan529 7 months ago - 9 comments

#60 - juicebox

Issue - State: closed - Opened by yunkyokim about 1 year ago

#59 - GW_KR vs KR

Issue - State: open - Opened by mattiasaine about 1 year ago

#58 - tag latest versions

Issue - State: open - Opened by pur80a over 1 year ago - 2 comments

#57 - differential loop analysis - how much difference it is?

Issue - State: open - Opened by zhengrongbin over 1 year ago

#56 - list index out of range!

Issue - State: open - Opened by ccmeth almost 2 years ago - 4 comments

#55 - Legacy hic-straw code comment

Issue - State: closed - Opened by joreynajr almost 2 years ago

#54 - question about diffloop results

Issue - State: open - Opened by Lattesnow almost 2 years ago - 1 comment

#53 - how to generate the z-scaore?

Issue - State: open - Opened by DittmanC about 2 years ago - 1 comment

#52 - generate this errors, dont know if it's my .hic file has some problem

Issue - State: open - Opened by Lattesnow about 2 years ago - 8 comments

#51 - .hic -ch error/Docker update?

Issue - State: closed - Opened by jaclyn-marie about 2 years ago - 1 comment

#50 - First 20MB of called loops missing for each chromosome.

Issue - State: closed - Opened by tolender about 2 years ago - 3 comments

#48 - Resolution of calling loops

Issue - State: open - Opened by BenxiaHu about 2 years ago - 1 comment

#47 - potential incorrect variable name

Issue - State: closed - Opened by tzcoolman about 2 years ago - 1 comment

#46 - Interchromosomal analysis

Issue - State: open - Opened by ycliangtaiwan about 2 years ago - 3 comments

#45 - issue using diff_mustache with .mcools

Issue - State: open - Opened by Elphege-Nora about 2 years ago - 1 comment

#44 - issue related to .hic with kr normalization

Issue - State: closed - Opened by ccmeth about 2 years ago - 1 comment

#43 - Different output using hic format (v1.2.7)

Issue - State: open - Opened by PaulaLopezMarti about 2 years ago - 1 comment

#42 - Out dated conda environment file

Issue - State: open - Opened by z2e2 over 2 years ago

#41 - differential loop analysis

Issue - State: open - Opened by TerezaClarence over 2 years ago - 8 comments

#40 - no module named 'straw'

Issue - State: closed - Opened by ccmeth over 2 years ago - 10 comments

#39 - mustache.py does not take .hic file as input

Issue - State: closed - Opened by Michael-Szalay over 2 years ago - 4 comments

#38 - Updated code to use straw

Pull Request - State: closed - Opened by sa501428 over 2 years ago

#37 - Diff_mustache vs regular mustache

Issue - State: closed - Opened by gdolsten almost 3 years ago - 1 comment

#36 - [bug] analysis of front end of chr skipped at diffrent bin sizes

Issue - State: closed - Opened by fboellmann almost 3 years ago - 4 comments

#35 - Calculation of distance limit?

Issue - State: closed - Opened by fboellmann almost 3 years ago - 1 comment

#34 - TypeError: nan_to_num() got an unexpected keyword argument 'neginf'

Issue - State: closed - Opened by fboellmann almost 3 years ago - 4 comments

#33 - crash during normalizing .hic file

Issue - State: closed - Opened by fboellmann almost 3 years ago

#32 - Different number of loops when I'm using diff_mustache.py

Issue - State: closed - Opened by EnrichettaMileti almost 3 years ago - 3 comments

#31 - Large loops

Issue - State: closed - Opened by meisterpeter almost 3 years ago - 1 comment

#30 - TypeError: 'int' object is not subscriptable

Issue - State: closed - Opened by pna059 almost 3 years ago - 1 comment

#29 - Diff_mustache error in regulator function

Issue - State: closed - Opened by batzza almost 3 years ago - 6 comments

#28 - Differential loop calling with .cool rather than .hic

Issue - State: closed - Opened by keoughkath almost 3 years ago - 2 comments

#27 - Strange error from diff-mustache

Issue - State: closed - Opened by gdolsten almost 3 years ago - 8 comments

#26 - Different output using hic and cool format

Issue - State: closed - Opened by yhx-tj about 3 years ago - 11 comments

#25 - diff_mustache.py crashing on input file format

Issue - State: closed - Opened by esebesty about 3 years ago - 6 comments

#24 - Differential option

Issue - State: closed - Opened by gdolsten about 3 years ago - 6 comments

#23 - Mustache crashes on hic file

Issue - State: closed - Opened by charlesfeigin about 3 years ago - 6 comments

#22 - mustache outputs on .cool file only chrX

Issue - State: closed - Opened by mblanche over 3 years ago - 3 comments

#21 - How to compare loops of Hi-C from different conditions?

Issue - State: closed - Opened by Linhua-Sun over 3 years ago - 2 comments

#20 - Different outputs using cooler and hic inputs with the same option.

Issue - State: closed - Opened by Linhua-Sun over 3 years ago - 7 comments

#19 - Mustache crashes on chrY using mcool files (cool files are fine now!)

Issue - State: closed - Opened by mblanche over 3 years ago - 6 comments
Labels: bug

#18 - mustache crashing on normalization step for small .cool files

Issue - State: closed - Opened by mblanche over 3 years ago - 8 comments

#17 - mustache crashing on human chrY in newly created .cool file

Issue - State: closed - Opened by mblanche over 3 years ago - 3 comments

#16 - Weight Column Error For Cooler Matrices

Issue - State: closed - Opened by sjquon over 3 years ago - 6 comments
Labels: bug, enhancement

#15 - Genomic region out of bounds

Issue - State: closed - Opened by EmmanuelCzt over 3 years ago - 5 comments

#14 - Text format input, chromosome naming mustache internal inconsistent with input file

Issue - State: closed - Opened by hanbinlu over 3 years ago - 3 comments

#13 - Loop calling with very high resolutions (100s of bp)

Issue - State: closed - Opened by gdolsten over 3 years ago - 5 comments

#12 - -ch parameter

Issue - State: closed - Opened by gdolsten over 3 years ago - 2 comments
Labels: enhancement

#11 - Loop calling on a very small chromosome

Issue - State: closed - Opened by liz-is over 3 years ago - 6 comments

#10 - Set distance filter

Issue - State: closed - Opened by auberginekenobi over 3 years ago - 2 comments

#9 - TypeError on FitHiC input

Issue - State: closed - Opened by auberginekenobi over 3 years ago - 1 comment

GitHub / ay-lab/mustache issues and pull requests