axiezai/pipetography issues and pull requests

#43 - Adding FA Weighting for pipetography

Pull Request - State: open - Opened by benjaminsipes over 2 years ago

#42 - Invalid first line for key/value file

Issue - State: open - Opened by ctlin001 over 2 years ago - 2 comments

#41 - fixed genericLabel > GenericLabel

Pull Request - State: closed - Opened by benjaminsipes almost 3 years ago

#40 - Connection in connectome needs to be a list

Issue - State: closed - Opened by axiezai almost 3 years ago - 1 comment
Labels: bug

#39 - The debug mode conditions is wrong XD

Issue - State: closed - Opened by axiezai almost 3 years ago
Labels: bug

#38 - Suppress warnings in notebooks for future docs

Issue - State: open - Opened by axiezai almost 3 years ago
Labels: documentation, enhancement

#37 - Added interpolation='genericLabel' fix

Pull Request - State: closed - Opened by benjaminsipes almost 3 years ago

#36 - Remove `args = genericLabel` and replace in `inputs.interpolation`

Issue - State: open - Opened by axiezai almost 3 years ago - 2 comments
Labels: bug

#35 - Fixed T1 reorient connection and connectomes pipeline sift_mask option

Pull Request - State: closed - Opened by benjaminsipes almost 3 years ago - 1 comment

#34 - Make GMWMI generation optional

Issue - State: closed - Opened by benjaminsipes almost 3 years ago - 1 comment

#33 - Remove `conda` from recipe

Issue - State: open - Opened by axiezai almost 3 years ago
Labels: enhancement

#32 - Remove connectomes rounding step

Issue - State: closed - Opened by benjaminsipes almost 3 years ago

#31 - Interpolation = genericLabel

Pull Request - State: closed - Opened by axiezai almost 3 years ago
Labels: bug, enhancement

#30 - Add `Reorient2Std` interface and connect, not release

Pull Request - State: closed - Opened by axiezai almost 3 years ago
Labels: enhancement

#29 - Better module names and refactor

Issue - State: open - Opened by axiezai almost 3 years ago - 1 comment
Labels: enhancement

#28 - mrtrix3's 5ttgen creating questionable GM-WM interface segmentation

Issue - State: closed - Opened by axiezai almost 3 years ago - 2 comments
Labels: question

#27 - Debug mode

Issue - State: closed - Opened by axiezai almost 3 years ago
Labels: enhancement, good first issue

#26 - fix `base_dir` repetitive path

Issue - State: closed - Opened by axiezai about 3 years ago

#25 - mrtrix3 3.0 now a default for neurodocker

Issue - State: open - Opened by axiezai about 3 years ago - 1 comment

#24 - connectome workflow needs sub-ses filtering

Issue - State: closed - Opened by axiezai about 3 years ago - 1 comment

#23 - Segmentation workflow

Issue - State: closed - Opened by axiezai over 3 years ago

#22 - Can't build docker image

Issue - State: open - Opened by axiezai over 3 years ago

#21 - Bump nokogiri from 1.10.8 to 1.11.2 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#20 - update instructions on `how to run`

Issue - State: closed - Opened by pfdamasceno almost 4 years ago - 1 comment

#19 - Working directory for workflow should also be specified somehow...

Issue - State: closed - Opened by axiezai almost 4 years ago - 2 comments

#18 - Add docker hub download instructions for setup

Issue - State: closed - Opened by axiezai almost 4 years ago - 1 comment

#17 - Remove freesurfer and matlab from environment check

Issue - State: closed - Opened by axiezai almost 4 years ago - 1 comment
Labels: bug, documentation, enhancement

#16 - WOP: reorganize

Pull Request - State: open - Opened by pfdamasceno almost 4 years ago - 1 comment

#15 - testing...

Issue - State: open - Opened by axiezai almost 4 years ago - 1 comment
Labels: enhancement

#14 - Output datasink to BIDS structure

Issue - State: closed - Opened by axiezai almost 4 years ago - 2 comments

#13 - libopenblas.so.0 missing

Issue - State: closed - Opened by axiezai almost 4 years ago - 1 comment
Labels: bug

#12 - Added postprocessing and connectome generation

Pull Request - State: closed - Opened by axiezai almost 4 years ago
Labels: enhancement

#11 - More efficient freesurfer and white matter behavior

Issue - State: closed - Opened by axiezai almost 4 years ago - 1 comment
Labels: bug, enhancement

#10 - Fix container recipe to exclude conda environment step

Issue - State: closed - Opened by axiezai almost 4 years ago - 1 comment
Labels: enhancement, help wanted

#9 - Added nodes for creating WM mask from freesurfer output s

Pull Request - State: closed - Opened by axiezai about 4 years ago

#8 - FS 7.1 hippocampal subfield incorrect inputs

Issue - State: closed - Opened by axiezai about 4 years ago - 1 comment
Labels: bug, good first issue

#7 - version bumps

Pull Request - State: closed - Opened by axiezai about 4 years ago

#6 - Rpe update

Pull Request - State: closed - Opened by axiezai about 4 years ago

#5 - Docs/Instructions/Formatting

Issue - State: closed - Opened by axiezai over 4 years ago - 1 comment
Labels: documentation

#4 - Bump nokogiri from 1.10.5 to 1.10.8 in /docs

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#3 - Complete input features for certain commands

Issue - State: open - Opened by axiezai over 4 years ago - 5 comments
Labels: bug, enhancement, good first issue

#2 - Update `settings.ini` with barebones requirements!

Issue - State: closed - Opened by axiezai over 4 years ago - 1 comment
Labels: documentation, enhancement, help wanted, good first issue

#1 - Set-up CI with neurodocker

Issue - State: closed - Opened by axiezai over 4 years ago - 1 comment
Labels: enhancement, help wanted

GitHub / axiezai/pipetography issues and pull requests