Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / awslabs/amazon-omics-tools issues and pull requests

#91 - Rename pypi package

Pull Request - State: closed - Opened by markjschreiber 6 days ago

#90 - list-modify-while-iterate

Issue - State: open - Opened by obenshaindw 7 days ago - 1 comment
Labels: enhancement

#89 - Update README.md

Pull Request - State: closed - Opened by markjschreiber 12 days ago

#88 - Add UUID to run analyzer output

Issue - State: open - Opened by markjschreiber 14 days ago
Labels: enhancement, run analyzer

#87 - release v0.10.0

Pull Request - State: closed - Opened by markjschreiber 22 days ago

#86 - Issue/85

Pull Request - State: closed - Opened by markjschreiber 23 days ago

#85 - run analyzer crashes when trying to get plots for fully cached runs

Issue - State: closed - Opened by avigailmo about 1 month ago - 6 comments
Labels: bug

#83 - lint fixes

Pull Request - State: closed - Opened by markjschreiber about 2 months ago

#82 - fix for config output

Pull Request - State: closed - Opened by KevinSayers about 2 months ago

#81 - Tool uses `cpu` instead of `cpus` directive when creating nextflow config file

Issue - State: closed - Opened by pbieberstein2 about 2 months ago - 2 comments
Labels: bug

#80 - release v0.9.0

Pull Request - State: closed - Opened by markjschreiber about 2 months ago

#79 - fix: issue 77

Pull Request - State: closed - Opened by markjschreiber about 2 months ago

#78 - sets default creation date

Pull Request - State: closed - Opened by markjschreiber about 2 months ago

#77 - run analyzer fails on run with cache

Issue - State: closed - Opened by avigailmo 2 months ago - 5 comments
Labels: bug, good first issue

#76 - Bump tornado from 6.4.1 to 6.4.2

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies

#75 - run analyzer fails when workflow doesn't exist

Issue - State: closed - Opened by avigailmo 2 months ago - 3 comments
Labels: bug

#74 - Write-config should include process

Issue - State: closed - Opened by KevinSayers 3 months ago
Labels: bug

#73 - Batch output

Issue - State: open - Opened by KevinSayers 3 months ago
Labels: bug

#72 - Add CLI tool to generate samplesheets

Pull Request - State: open - Opened by KevinSayers 4 months ago

#71 - Handle edge cases when obtaining workflow ids

Issue - State: open - Opened by markjschreiber 4 months ago

#70 - Improve args creation and validation

Issue - State: open - Opened by markjschreiber 4 months ago
Labels: enhancement, run analyzer

#69 - Batch mode

Pull Request - State: closed - Opened by markjschreiber 4 months ago

#68 - bump minor version

Pull Request - State: closed - Opened by markjschreiber 4 months ago

#67 - Fix for dropped events

Pull Request - State: closed - Opened by markjschreiber 4 months ago

#66 - Update README.md

Pull Request - State: closed - Opened by markjschreiber 5 months ago

#64 - Update README.md

Pull Request - State: closed - Opened by markjschreiber 5 months ago

#63 - Add option to output a new config file

Pull Request - State: closed - Opened by KevinSayers 5 months ago - 1 comment

#62 - Cost estimates should use a min runtime of 1 minute

Pull Request - State: closed - Opened by hmkim 5 months ago

#61 - queud > starting (Correcting terminology)

Pull Request - State: closed - Opened by hmkim 5 months ago

#60 - Cost estimates should use a min runtime of 1 minute

Issue - State: closed - Opened by markjschreiber 5 months ago - 1 comment
Labels: run analyzer

#59 - Change "queuing" metrics to "starting"

Issue - State: closed - Opened by markjschreiber 5 months ago - 1 comment
Labels: run analyzer

#58 - Headroom

Pull Request - State: closed - Opened by markjschreiber 5 months ago

#57 - bump version to 0.5.0

Pull Request - State: closed - Opened by markjschreiber 5 months ago

#56 - adds recommended memory and cpu

Pull Request - State: closed - Opened by markjschreiber 5 months ago

#55 - Timeline integration

Pull Request - State: closed - Opened by markjschreiber 5 months ago

#54 - Add ability for run analyzer to produce a timeline chart

Issue - State: closed - Opened by markjschreiber 6 months ago - 1 comment
Labels: run analyzer

#53 - Add feature to compute sum of potential savings to run analyzer

Issue - State: closed - Opened by markjschreiber 6 months ago - 2 comments
Labels: run analyzer

#52 - Investigate RunAnalyzer limitations with data from incomplete/ failed runs

Issue - State: closed - Opened by markjschreiber 6 months ago
Labels: run analyzer

#51 - Add the ability to add a "headroom" factor to run analyzer recommendations

Issue - State: closed - Opened by markjschreiber 6 months ago
Labels: run analyzer

#49 - Fixes dynamic storage issue for short runs

Pull Request - State: closed - Opened by markjschreiber 6 months ago

#48 - handles missing resources key

Pull Request - State: closed - Opened by markjschreiber 6 months ago

#47 - Omics instance columns

Pull Request - State: closed - Opened by KevinSayers 6 months ago

#46 - renames some column names and clarifies their descriptions

Pull Request - State: closed - Opened by markjschreiber 6 months ago

#45 - (omics.cli.run_analyzer) storageType is null for old runs.

Issue - State: closed - Opened by hmkim 6 months ago - 1 comment

#44 - Update boto3 version in the requirements

Issue - State: closed - Opened by inbalzelig-ugi 6 months ago - 3 comments

#43 - Fixed black and mypy issue

Pull Request - State: closed - Opened by WIIASD 7 months ago

#42 - Bump certifi from 2024.6.2 to 2024.7.4

Pull Request - State: closed - Opened by dependabot[bot] 7 months ago - 2 comments
Labels: dependencies

#41 - Properly set workflow type for rerun

Pull Request - State: closed - Opened by WIIASD 7 months ago

#40 - refactor cli tools to be pip installable

Pull Request - State: closed - Opened by wleepang 8 months ago

#39 - KeyError in omics-rerun tool

Issue - State: open - Opened by smlchen 8 months ago

#38 - Added dynamic run storage pricing

Pull Request - State: closed - Opened by mapk-amazon 8 months ago

#37 - Add correct pricing for dynamic run storage for `omics-run-analyzer`

Issue - State: closed - Opened by mapk-amazon 8 months ago
Labels: run analyzer

#36 - Bump requests from 2.31.0 to 2.32.0

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#35 - Add requested cpus/gpus/memory to output

Pull Request - State: closed - Opened by mhemesath 9 months ago

#34 - Bump idna from 3.4 to 3.7

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#33 - Adding a script to collapse repetitive tasks.

Issue - State: closed - Opened by jwarnn 10 months ago - 5 comments
Labels: run analyzer

#32 - Extend README for omics-run-analyzer

Pull Request - State: closed - Opened by ahenroid 10 months ago

#31 - Bump black from 22.12.0 to 24.3.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#30 - Add user specified resources to omics-run-analyzer CSV output file

Issue - State: closed - Opened by sunilaladhi 11 months ago - 3 comments

#29 - Add omics-run-analyzer tool

Pull Request - State: closed - Opened by ahenroid 12 months ago - 1 comment

#28 - Table to list all tools

Issue - State: closed - Opened by sunilaladhi about 1 year ago - 1 comment

#27 - Update CONTRIBUTING.md

Pull Request - State: closed - Opened by markjschreiber about 1 year ago - 1 comment

#26 - Error in CONTRIBUTING file

Issue - State: closed - Opened by hyandell about 1 year ago - 1 comment

#25 - Increment release version

Pull Request - State: closed - Opened by tneely about 1 year ago

#24 - Upgrade boto3 and botocore versions to get UBAM changes

Pull Request - State: closed - Opened by duongwilAWS about 1 year ago

#23 - Add support for UBAM upload and optional referenceArn

Pull Request - State: closed - Opened by duongwilAWS about 1 year ago

#22 - Bump pip from 23.1.2 to 23.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#21 - Add UBAM support and replace ReadSetFileType with str

Pull Request - State: closed - Opened by duongwilAWS over 1 year ago - 1 comment

#20 - Bump urllib3 from 1.26.15 to 1.26.18

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#19 - Bump urllib3 from 1.26.15 to 1.26.17

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#18 - Initial commit to add omics-rerun tool.

Pull Request - State: closed - Opened by mhemesath over 1 year ago

#17 - Bump certifi from 2023.5.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#16 - TypeError: 'type' object is not subscriptable

Issue - State: closed - Opened by hmkim over 1 year ago - 1 comment

#15 - Bump requests from 2.29.0 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#14 - Add OmicsUri region, account_id, and default file_name support

Pull Request - State: closed - Opened by ahenroid over 1 year ago - 1 comment

#13 - chore: Bump minor version

Pull Request - State: closed - Opened by tneely over 1 year ago

#12 - feat: Add support for read set uploads

Pull Request - State: closed - Opened by tneely over 1 year ago

#11 - Create python-build-workflow.yml

Pull Request - State: closed - Opened by mahvidulAws almost 2 years ago

#10 - Add URI parser for omics resource URIs

Pull Request - State: closed - Opened by mahvidulAws almost 2 years ago - 1 comment

#9 - Re-add Bandit after vulnerability is patched

Issue - State: open - Opened by rforsyth about 2 years ago

#8 - Remove Bandit temporarily due to CVE-2022-24439

Pull Request - State: closed - Opened by rforsyth about 2 years ago - 1 comment

#7 - Bump certifi from 2022.9.24 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#5 - Add description for PyPI and bump version for release

Pull Request - State: closed - Opened by rforsyth about 2 years ago

#4 - Add Security Check on Pull Request

Pull Request - State: closed - Opened by eddie1183 about 2 years ago

#3 - Add an extension and counter to the downloaded file depending on type.

Pull Request - State: closed - Opened by rforsyth about 2 years ago

#2 - Move Transfer Manager to new design

Pull Request - State: closed - Opened by rforsyth about 2 years ago - 1 comment

#1 - Move initial implementation into GitHub

Pull Request - State: closed - Opened by rforsyth about 2 years ago