aweimann/traitar issues and pull requests

#71 - traitar phenotype

Issue - State: open - Opened by lanlan0210 over 1 year ago - 8 comments

#70 - Set numpy version in bioconda recipe

Issue - State: open - Opened by liamfitzstevens over 1 year ago - 1 comment

#69 - Update bioconda recipe to resolve: AttributeError: 'DataFrame' object has no attribute 'sort'

Issue - State: open - Opened by Jtrachsel almost 4 years ago

#68 - Filename limit of 40 chars

Issue - State: open - Opened by foobarx over 5 years ago - 1 comment

#67 - failed to reproduce the example result using the docker image

Issue - State: closed - Opened by housw almost 6 years ago - 2 comments

#66 - SyntaxError: Missing parentheses in call to 'print'.

Issue - State: closed - Opened by jahicks4 over 6 years ago - 3 comments

#65 - AttributeError: 'DataFrame' object has no attribute 'sort_values'

Issue - State: open - Opened by sminot about 7 years ago - 12 comments

#64 - Misalignment of Traitar heatmap

Issue - State: open - Opened by haruosuz about 7 years ago - 2 comments

#63 - TypeError: expected string or buffer

Issue - State: open - Opened by Katterinne about 7 years ago - 3 comments

#62 - Changes to wrapper to integrate with Bibiserv

Pull Request - State: open - Opened by foobarx over 7 years ago - 2 comments

#61 - Problems with Pfam-A

Issue - State: open - Opened by gerpinho over 7 years ago - 3 comments

#60 - Traitar fails if all samples have the same categories

Issue - State: open - Opened by aweimann over 7 years ago

#59 - Duplicate sample names

Issue - State: open - Opened by aweimann over 7 years ago

#58 - error while running traitar phenotype

Issue - State: closed - Opened by TonyaWard over 7 years ago

#57 - Update refs

Issue - State: closed - Opened by abremges almost 8 years ago - 2 comments

#56 - ERROR: reduce the number of sample categories to less than 15

Issue - State: open - Opened by mattbawn almost 8 years ago - 1 comment

#55 - Missing parentheses in call to 'print'

Issue - State: closed - Opened by swuyts almost 8 years ago - 4 comments

#54 - Heatmap generation fails

Issue - State: open - Opened by mherold1 almost 8 years ago - 2 comments

#53 - Doesnt work for me at the first step

Issue - State: closed - Opened by fauziharoon over 8 years ago - 5 comments

#52 - Error message

Issue - State: closed - Opened by suzumar over 8 years ago - 4 comments

#51 - -c leads to "Unknown option" message

Issue - State: closed - Opened by bachev over 8 years ago - 1 comment

#50 - Add Kyra

Pull Request - State: closed - Opened by abremges over 8 years ago
Labels: enhancement

#49 - Packaging of config file

Issue - State: closed - Opened by abremges over 8 years ago - 1 comment
Labels: question

#48 - Error during execution

Issue - State: closed - Opened by microbiaki over 8 years ago - 3 comments

#47 - Optionally disable genome and/or phenotype clustering

Issue - State: closed - Opened by abremges over 8 years ago - 5 comments
Labels: enhancement

#46 - sync changes directly applied @ hzi_bifo repo

Pull Request - State: closed - Opened by aweimann over 8 years ago

#45 - no prodigal required if from_genes

Issue - State: closed - Opened by aweimann over 8 years ago
Labels: enhancement

#44 - Add citation info

Pull Request - State: closed - Opened by abremges over 8 years ago - 1 comment
Labels: enhancement

#43 - Outsource installation instructions

Pull Request - State: closed - Opened by abremges over 8 years ago - 1 comment

#42 - Showcase example output

Issue - State: closed - Opened by abremges over 8 years ago - 2 comments
Labels: enhancement

#41 - Prettify README

Pull Request - State: closed - Opened by abremges over 8 years ago

#40 - Create LICENSE

Pull Request - State: closed - Opened by abremges over 8 years ago

#39 - only one sample supplied

Issue - State: closed - Opened by aweimann almost 9 years ago
Labels: bug

#38 - More verbose recompute messages

Issue - State: closed - Opened by aweimann almost 9 years ago

#37 - feature track generation

Issue - State: closed - Opened by aweimann almost 9 years ago

#36 - requirements

Issue - State: closed - Opened by aweimann almost 9 years ago - 3 comments
Labels: bug

#35 - Python 3.x

Issue - State: open - Opened by aweimann almost 9 years ago - 4 comments
Labels: enhancement

#34 - update of hzi-bifo fork

Pull Request - State: closed - Opened by aweimann almost 9 years ago

#33 - legend placement

Issue - State: closed - Opened by aweimann almost 9 years ago
Labels: enhancement

#32 - Get rid of future warnings

Issue - State: closed - Opened by aweimann almost 9 years ago

#31 - traitar pfam /tmp/traitar-pfam uses too much RAM

Issue - State: closed - Opened by fungs almost 9 years ago - 2 comments

#30 - config problem

Issue - State: closed - Opened by aweimann almost 9 years ago
Labels: enhancement

#29 - Alternative gene prediction software

Issue - State: closed - Opened by aweimann almost 9 years ago - 1 comment
Labels: enhancement

#28 - GNU parallel --will-cite

Issue - State: closed - Opened by aweimann almost 9 years ago - 2 comments

#27 - feature track generation

Issue - State: closed - Opened by aweimann almost 9 years ago

#26 - sample_data

Issue - State: closed - Opened by abremges about 9 years ago
Labels: question

#25 - Print smth. before the hmmsearch step

Issue - State: closed - Opened by abremges about 9 years ago - 1 comment
Labels: enhancement

#24 - Update README.md

Pull Request - State: closed - Opened by abremges about 9 years ago

#23 - traitAR name

Issue - State: closed - Opened by abremges about 9 years ago - 1 comment
Labels: question

#22 - 67 Traits?

Issue - State: closed - Opened by abremges about 9 years ago - 1 comment
Labels: question

#21 - Auto-install python dependencies

Issue - State: closed - Opened by abremges about 9 years ago - 3 comments
Labels: enhancement

#20 - Print version

Issue - State: closed - Opened by abremges about 9 years ago - 2 comments

#19 - Print help if (sub)program is called w/o args

Issue - State: closed - Opened by abremges about 9 years ago - 1 comment
Labels: enhancement

#18 - Undocumented sample file

Issue - State: closed - Opened by abremges about 9 years ago
Labels: enhancement