Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / atgu/ukbb_pan_ancestry issues and pull requests

#109 - missing variant from tabix

Issue - State: open - Opened by nzhun 26 days ago

#108 - Update plink_clump_hail.py

Pull Request - State: closed - Opened by ktsuo about 1 year ago

#107 - Update plink_clump.py

Pull Request - State: closed - Opened by ktsuo about 1 year ago

#106 - update prs.py

Pull Request - State: closed - Opened by ktsuo about 1 year ago

#105 - added code for opentargets/EFO

Pull Request - State: closed - Opened by mkanai over 1 year ago

#104 - Inquiry about running the code in the repo

Issue - State: open - Opened by YuhaoTan2 over 1 year ago

#102 - Bump minimist from 1.2.5 to 1.2.8 in /website

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#100 - Bump http-cache-semantics from 4.1.0 to 4.1.1 in /website

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#99 - added ldprune_dir for clumping_results_path

Pull Request - State: closed - Opened by ktsuo almost 2 years ago

#98 - updated get_clump_results_path

Pull Request - State: closed - Opened by ktsuo almost 2 years ago

#97 - update get_clumping_results_path

Pull Request - State: closed - Opened by ktsuo almost 2 years ago

#96 - Bump ua-parser-js from 0.7.23 to 0.7.33 in /website

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#94 - Resolve MAF issue, export log10 p, enable custom sumstats

Pull Request - State: closed - Opened by rahulg603 almost 2 years ago

#93 - Bump json5 from 1.0.1 to 1.0.2 in /website

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#92 - Bump express from 4.17.1 to 4.18.2 in /website

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#91 - Bump decode-uri-component from 0.2.0 to 0.2.2 in /website

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#90 - Which age and sex fields were used as covariates?

Issue - State: open - Opened by dvg-p4 about 2 years ago

#89 - Fix broken h2 path

Pull Request - State: closed - Opened by rahulg603 over 2 years ago

#88 - Bump terser from 4.8.0 to 4.8.1 in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#87 - Negative P-values in GWAS Results

Issue - State: closed - Opened by smsinks over 2 years ago

#85 - Bump eventsource from 1.0.7 to 1.1.1 in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#84 - Added get_md5_size_table, a batch script to obtain md5s and file size…

Pull Request - State: closed - Opened by rahulg603 over 2 years ago - 1 comment

#83 - Update the documentation

Pull Request - State: closed - Opened by mkanai over 2 years ago - 2 comments

#82 - Add hq_phenos to get_clumping_results_path

Pull Request - State: closed - Opened by ktsuo over 2 years ago

#81 - update LD matrices path

Pull Request - State: closed - Opened by mkanai over 2 years ago

#80 - Bump async from 2.6.3 to 2.6.4 in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#79 - One more fix of log10 p-value

Pull Request - State: closed - Opened by rahulg603 over 2 years ago

#78 - Update site for release 220414

Pull Request - State: closed - Opened by rahulg603 over 2 years ago

#77 - Update site for release 2204

Pull Request - State: closed - Opened by rahulg603 over 2 years ago

#76 - Bump minimist from 1.2.5 to 1.2.6 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#75 - fix a meta p-value bug which was introduced when we took log(P)

Pull Request - State: closed - Opened by mkanai over 2 years ago

#73 - l2.M_5_50 files per chromosome

Issue - State: open - Opened by dianacornejo over 2 years ago - 2 comments

#72 - Using with local Pan ukbb data

Issue - State: closed - Opened by jerome-f over 2 years ago - 1 comment

#71 - Bump url-parse from 1.4.7 to 1.5.10 in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#70 - Bump prismjs from 1.23.0 to 1.27.0 in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#69 - Bump url-parse from 1.4.7 to 1.5.7 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#68 - Bump follow-redirects from 1.13.1 to 1.14.8 in /website

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#67 - Bump follow-redirects from 1.13.1 to 1.14.7 in /website

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#66 - Bump shelljs from 0.8.4 to 0.8.5 in /website

Pull Request - State: open - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#64 - Updated sumstat exporting to use updated meta analysis results. Summa…

Pull Request - State: closed - Opened by rahulg603 almost 3 years ago - 3 comments

#63 - Updated load_final_sumstats_mt to include an argument which exponenti…

Pull Request - State: closed - Opened by rahulg603 almost 3 years ago - 1 comment

#62 - Bump algoliasearch-helper from 3.3.4 to 3.6.2 in /website

Pull Request - State: open - Opened by dependabot[bot] almost 3 years ago
Labels: dependencies

#61 - Updated meta-analysis

Pull Request - State: closed - Opened by mkanai about 3 years ago

#60 - compute stratified ld score

Pull Request - State: closed - Opened by mkanai about 3 years ago

#59 - replace ukb_common with ukbb_common

Pull Request - State: open - Opened by mkanai about 3 years ago

#58 - Bump color-string from 1.5.4 to 1.6.0 in /website

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#57 - Bump url-parse from 1.4.7 to 1.5.3 in /website

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#56 - Bump prismjs from 1.23.0 to 1.25.0 in /website

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#55 - Bump tar from 6.1.0 to 6.1.11 in /website

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#54 - Bump path-parse from 1.0.6 to 1.0.7 in /website

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#53 - Bump tar from 6.1.0 to 6.1.5 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#52 - Bump prismjs from 1.23.0 to 1.24.0 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#51 - Bump postcss from 7.0.35 to 7.0.36 in /website

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#49 - Added heritability analysis pipelines.

Pull Request - State: closed - Opened by rahulg603 over 3 years ago

#48 - Added h2 flat file importing and modified load_final_sumstats_mt to filter by h2 filters

Pull Request - State: closed - Opened by rahulg603 over 3 years ago - 1 comment

#46 - Added heritability analysis pipelines, modified load_final_sumstats_mt

Pull Request - State: closed - Opened by rahulg603 over 3 years ago

#45 - Bump ws from 6.2.1 to 6.2.2 in /website

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#44 - Bump dns-packet from 1.3.1 to 1.3.4 in /website

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#43 - Bump lodash from 4.17.20 to 4.17.21 in /website

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#42 - Bump url-parse from 1.4.7 to 1.5.1 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#41 - Bump ua-parser-js from 0.7.23 to 0.7.28 in /website

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#40 - LD score between 1000 genome and UKB-Pan

Issue - State: open - Opened by Shicheng-Guo over 3 years ago

#39 - Fix trait type input

Pull Request - State: open - Opened by mattsolo1 over 3 years ago - 3 comments

#38 - Bump ssri from 6.0.1 to 6.0.2 in /website

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#37 - Bump elliptic from 6.5.3 to 6.5.4 in /website

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#36 - Minor fixes

Pull Request - State: closed - Opened by huy-nguyen over 3 years ago

#35 - Add interactive phenotype table

Pull Request - State: closed - Opened by huy-nguyen almost 4 years ago

#33 - Added compute_neff() to summary_statistics_analysis.py

Pull Request - State: closed - Opened by ktsuo almost 4 years ago

#32 - Arguments for load_covid_data() added

Pull Request - State: closed - Opened by wlu04 almost 4 years ago

#31 - Add compute_variances to summary_statistics_analysis.py

Pull Request - State: closed - Opened by ktsuo almost 4 years ago

#30 - Ancestry PCA

Issue - State: open - Opened by samkleeman1 almost 4 years ago

#29 - Data paths added

Pull Request - State: closed - Opened by wlu04 almost 4 years ago

#28 - Choice of covariates

Issue - State: open - Opened by swvanderlaan about 4 years ago

#27 - Sex stratified analyses

Issue - State: open - Opened by swvanderlaan about 4 years ago

#26 - Fix build bug

Pull Request - State: closed - Opened by mattsolo1 about 4 years ago

#25 - LD release documents

Pull Request - State: closed - Opened by mkanai about 4 years ago - 2 comments

#24 - Added blog post for LD score comparisons between gnomAD and UKB.

Pull Request - State: closed - Opened by rahulg603 about 4 years ago

#23 - added plink clumping scripts

Pull Request - State: closed - Opened by nikbaya about 4 years ago

#22 - gnomad_lof/R/constants.R is missing

Issue - State: closed - Opened by Shicheng-Guo about 4 years ago - 1 comment

#21 - UKBB-Pan-ancestry summary statistics is hg19 or hg38 based?

Issue - State: closed - Opened by Shicheng-Guo over 4 years ago - 1 comment

#20 - When will preprint paper come out to describe this Pan-UKB work?

Issue - State: closed - Opened by Shicheng-Guo over 4 years ago - 1 comment

#19 - first pass PRS script

Pull Request - State: closed - Opened by konradjk over 4 years ago

#18 - Make page headings consistent

Pull Request - State: closed - Opened by mattsolo1 over 4 years ago

#17 - Update deployment scripts

Pull Request - State: closed - Opened by mattsolo1 over 4 years ago

#16 - Add patch script for docusaurus routing issue

Pull Request - State: closed - Opened by mattsolo1 over 4 years ago

#15 - Configure website pages

Pull Request - State: closed - Opened by mattsolo1 over 4 years ago

#14 - Added dark logo

Pull Request - State: closed - Opened by mkanai over 4 years ago - 1 comment

#13 - Add website

Pull Request - State: closed - Opened by mattsolo1 over 4 years ago

#12 - Height missing for EUR

Issue - State: open - Opened by konradjk over 4 years ago

#11 - added filter_mac_instead_of_ac

Pull Request - State: closed - Opened by mkanai over 4 years ago

#10 - Document LD matrix / score computation

Issue - State: closed - Opened by mkanai over 4 years ago - 1 comment