Ecosyste.ms: Issues
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GitHub / atarashansky/SAMap issues and pull requests
#52 - V0.3.0
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#51 - SAMap error with windows machines
Issue -
State: closed - Opened by jmmusser about 3 years ago
- 3 comments
#50 - V0.2.4
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#49 - v0.2.3
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#48 - V0.2.2
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#47 - V0.2.0
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#46 - updates
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#45 - V0.2.0
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#44 - updated docstrings
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#43 - applied patch
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#42 - V0.2.0
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#41 - V0.1.9
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#40 - Leiden clustering on SAMap adata object
Issue -
State: closed - Opened by dkeitley about 3 years ago
- 3 comments
#39 - V0.1.9
Pull Request -
State: closed - Opened by atarashansky about 3 years ago
#38 - Extracting cross-species nearest neighbours
Issue -
State: closed - Opened by dkeitley over 3 years ago
- 1 comment
#37 - AttributeError: Can't get attribute 'Samap_Iter' on <module 'samap.mapping' from [path to samap package]
Issue -
State: closed - Opened by philoel over 3 years ago
- 4 comments
#36 - Merging changes
Pull Request -
State: closed - Opened by atarashansky over 3 years ago
#35 - Segmentation fault running map_genes.sh
Issue -
State: closed - Opened by dkeitley over 3 years ago
- 6 comments
#34 - Would you add some example data for test?
Issue -
State: closed - Opened by yxj17173 over 3 years ago
- 3 comments
#33 - do functional enrichment
Issue -
State: closed - Opened by liuyifang over 3 years ago
- 2 comments
#32 - ScanPy/UMAP compatibility
Issue -
State: closed - Opened by wagnerde over 3 years ago
- 1 comment
#31 - V0.1.6
Pull Request -
State: closed - Opened by atarashansky over 3 years ago
#30 - Add function to make KOG enrichment dotplots
Issue -
State: closed - Opened by atarashansky over 3 years ago
#29 - Add Eggnog mapper to Dockerfile and put run commands in tutorial, along with example of KOGEnrichment analysis.
Issue -
State: closed - Opened by atarashansky over 3 years ago
#28 - Add functionality to generate gene expression overlap plots in `samap.mapping.SAMAP`.
Issue -
State: closed - Opened by atarashansky over 3 years ago
- 1 comment
#27 - Add KOG enrichment analysis to the `analysis` module.
Issue -
State: closed - Opened by atarashansky over 3 years ago
- 1 comment
#26 - Allow users to pass in preprocessed AnnData and specify which `obsm` slot to use for mapping.
Issue -
State: closed - Opened by atarashansky over 3 years ago
#25 - Profile `_concatenate_sam` -- seems to run a bit slow
Issue -
State: closed - Opened by atarashansky over 3 years ago
#24 - Add back label propagation!
Issue -
State: closed - Opened by atarashansky over 3 years ago
#23 - V0.1.5
Pull Request -
State: closed - Opened by atarashansky over 3 years ago
#22 - UMAP failing due to version incompatibility — add version requirements to setup.py
Issue -
State: closed - Opened by atarashansky over 3 years ago
- 1 comment
#21 - Normalize alignment scores by cluster sizes
Issue -
State: closed - Opened by atarashansky over 3 years ago
- 1 comment
#20 - Fixes to npus fix
Pull Request -
State: closed - Opened by pinin4fjords over 3 years ago
#19 - AttributeError: type object 'object' has no attribute 'dtype'
Issue -
State: closed - Opened by pinin4fjords over 3 years ago
- 1 comment
#15 - Fix `calculate_eggnog_graph` -- currently, the rows and columns in adjacency graph are not sorted by species
Issue -
State: closed - Opened by atarashansky over 3 years ago
- 1 comment
#14 - Add some tutorials for porting Seurat results into SAMap
Issue -
State: closed - Opened by atarashansky over 3 years ago
- 1 comment
#10 - Added the option of giving arguments to map_genes.sh (easier to use u…
Pull Request -
State: closed - Opened by atarashansky almost 4 years ago
- 1 comment