Ecosyste.ms: Issues

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GitHub / arq5x/cyvcf issues and pull requests

#33 - utils.walk_together() is incorrect

Issue - State: open - Opened by cariaso over 8 years ago

#32 - support for python3

Pull Request - State: open - Opened by sein-tao over 8 years ago

#31 - Updating from arq5x 2016-04-06

Pull Request - State: open - Opened by mosheein almost 9 years ago

#30 - Metadata modification and others minor updates

Pull Request - State: open - Opened by bunop about 9 years ago

#29 - update _vcf_metadata_parser to match pyvcf

Pull Request - State: open - Opened by cfriedline over 9 years ago

#28 - Parsing variant FILTER column

Issue - State: open - Opened by sigven over 9 years ago

#27 - dont index string

Pull Request - State: closed - Opened by brentp over 9 years ago

#26 - another couple percent

Pull Request - State: closed - Opened by brentp over 9 years ago

#25 - speed and code improvemnets

Pull Request - State: closed - Opened by brentp over 9 years ago

#24 - Improve logic to guess Flags/String for INFO fields not in header

Pull Request - State: closed - Opened by chapmanb over 9 years ago - 1 comment

#23 - handle GL with single int/float

Pull Request - State: closed - Opened by brentp over 9 years ago

#22 - make INFO dict public for use in gemini

Pull Request - State: closed - Opened by brentp almost 10 years ago - 3 comments

#21 - handle flag in info field. see arq5x/gemini#431.

Pull Request - State: closed - Opened by brentp almost 10 years ago

#20 - add genotype likelihood support.

Pull Request - State: closed - Opened by brentp almost 10 years ago

#19 - handling Charcter type values in INFO

Pull Request - State: closed - Opened by mosheein almost 10 years ago - 1 comment

#18 - handle AD when it's not a list

Pull Request - State: closed - Opened by brentp almost 10 years ago

#17 - add genotype likelihood support.

Pull Request - State: closed - Opened by brentp almost 10 years ago - 2 comments

#16 - performance improvements: gives ~ 10-15% when accessing gt_* while parsi...

Pull Request - State: closed - Opened by brentp almost 10 years ago - 1 comment

#15 - Public attrs

Pull Request - State: closed - Opened by brentp almost 10 years ago

#14 - Revert "Public attrs"

Pull Request - State: open - Opened by arq5x almost 10 years ago

#13 - Public attrs

Pull Request - State: closed - Opened by brentp almost 10 years ago - 1 comment

#12 - Support genotype fields with blank spaces

Pull Request - State: closed - Opened by chapmanb about 10 years ago - 1 comment

#11 - potentially inconsistent values in 'gt_types'

Issue - State: closed - Opened by rronen about 10 years ago - 1 comment

#10 - access metadata

Issue - State: closed - Opened by mictadlo over 10 years ago - 1 comment

#9 - Installation of cyvcf

Issue - State: open - Opened by sigven almost 11 years ago

#8 - Added function to select subset of samples for subsequent processing.

Pull Request - State: open - Opened by wenjiany about 11 years ago

#6 - Missing parser.c file?

Issue - State: open - Opened by ekay over 11 years ago - 1 comment

#5 - Handle AD inputs where the depths are a single value instead of a list, produced by VarScan

Pull Request - State: closed - Opened by chapmanb over 11 years ago - 1 comment

#4 - pickle support

Issue - State: open - Opened by superbobry over 11 years ago

#3 - Fixes for build issues from pypi

Pull Request - State: closed - Opened by chapmanb over 11 years ago - 1 comment

#2 - Parse VCF with haploid calls, all no-call variants and incorrect header information

Pull Request - State: closed - Opened by chapmanb over 12 years ago - 1 comment

#1 - Handle VCF with no genotypes

Issue - State: closed - Opened by seandavi over 12 years ago - 2 comments