aroneys/binchicken issues and pull requests

#161 - Add extra binners arg

Pull Request - State: open - Opened by AroneyS 16 days ago

#160 - Implement anchor_samples argument

Pull Request - State: closed - Opened by AroneyS 22 days ago

#159 - singlem issue

Issue - State: open - Opened by francesco-ricci 26 days ago - 15 comments

#158 - binchicken to recover genomes

Issue - State: closed - Opened by francesco-ricci 29 days ago - 6 comments

#157 - Add sra argument to coassemble

Pull Request - State: closed - Opened by AroneyS about 1 month ago

#156 - Add conda for count_bp_reads

Pull Request - State: closed - Opened by AroneyS about 2 months ago

#155 - cluster fails due to missing parallel dependency

Issue - State: closed - Opened by xvazquezc about 2 months ago - 6 comments

#154 - binchicken build error

Issue - State: open - Opened by ccgallen 2 months ago - 4 comments

#153 - Bump aviary to v0.10.0

Pull Request - State: closed - Opened by AroneyS 3 months ago

#152 - Update docs

Pull Request - State: closed - Opened by AroneyS 3 months ago

#151 - Run no genomes in lazy mode

Pull Request - State: closed - Opened by AroneyS 4 months ago

#150 - Add precluster distances argument

Pull Request - State: closed - Opened by AroneyS 4 months ago

#149 - Update snakemake to v8.25

Pull Request - State: open - Opened by AroneyS 4 months ago

#139 - Add docker container

Pull Request - State: open - Opened by AroneyS 5 months ago

#103 - doc thing

Issue - State: closed - Opened by wwood 12 months ago - 1 comment

#100 - Add links and citation

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#99 - Update precluster branch

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#98 - Track emerge_fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#97 - Track sra_fork

Pull Request - State: open - Opened by AroneyS about 1 year ago

#96 - Change name to binchicken

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#95 - Improve genome loading

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#94 - Update dependencies

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#93 - Snakefile improvements

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#92 - Kmer preclustering

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#91 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#90 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#89 - Add Aviary build to Ibis build

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#88 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#87 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#86 - Quality of life improvements

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#85 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#84 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#83 - update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#82 - update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#81 - update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#80 - update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#79 - Fix using max recovery samples with single assembly

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#78 - Update Aviary env

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#77 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#76 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#75 - Add SingleM metapackage env var

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#74 - Track emerge-fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#73 - Track sra-cluster-fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago

#72 - Update fork

Pull Request - State: closed - Opened by AroneyS about 1 year ago