Ecosyste.ms: Issues
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GitHub / arogozhnikov/demuxalot issues and pull requests
#33 - Added a BDRhapsody_specific.py and forced BarcodeHandler to read barc…
Pull Request -
State: closed - Opened by leqi0001 about 2 months ago
- 1 comment
#32 - [solved] empty output after count_snps() with BD Rhapsody bam files
Issue -
State: open - Opened by leqi0001 about 2 months ago
- 9 comments
#31 - rewrite readme
Pull Request -
State: closed - Opened by arogozhnikov 7 months ago
#30 - Examples: Add simple custom tag example
Pull Request -
State: closed - Opened by mschilli87 7 months ago
- 1 comment
#29 - bump version
Pull Request -
State: closed - Opened by arogozhnikov 7 months ago
#28 - delete previous deploy script
Pull Request -
State: closed - Opened by arogozhnikov 7 months ago
#27 - Update github workflows and move to pyproject.toml
Pull Request -
State: closed - Opened by arogozhnikov 7 months ago
#26 - Non cellranger tags
Pull Request -
State: closed - Opened by mschilli87 7 months ago
- 3 comments
#25 - `BarcodeHandler.from_file`: Pass down parameters
Pull Request -
State: closed - Opened by mschilli87 7 months ago
- 2 comments
#24 - Parameterize `parse_read` for custom UMI-tags etc.
Pull Request -
State: closed - Opened by mschilli87 7 months ago
- 4 comments
#23 - How do I define which BAM tags contain the UMI / cell barcode?
Issue -
State: closed - Opened by mschilli87 8 months ago
- 16 comments
Labels: question
#22 - Demuxafy problems: can't open file 'Demuxalot.py'
Issue -
State: open - Opened by MrLocuace 9 months ago
- 3 comments
Labels: third-party
#21 - Demuxafy question: Is demux.py the same as Demuxalot.py?
Issue -
State: open - Opened by MrLocuace 9 months ago
- 3 comments
Labels: third-party
#20 - update notebook
Pull Request -
State: closed - Opened by arogozhnikov over 2 years ago
#19 - move genotypes to it's separate file, add methods of importing inform…
Pull Request -
State: closed - Opened by arogozhnikov over 2 years ago
#18 - 0.4.0: A bit simpler formulation for calling + minor improvements in speed
Pull Request -
State: closed - Opened by arogozhnikov almost 3 years ago
#17 - Using demuxalot for ATAC data
Issue -
State: open - Opened by himanshiarora7 almost 3 years ago
- 3 comments
Labels: question
#16 - Questions about providing genotypes to demuxalot
Issue -
State: open - Opened by cartographerJ almost 3 years ago
- 4 comments
Labels: question
#15 - Parquet-ize betas (learnt genotypes data)
Issue -
State: closed - Opened by arogozhnikov almost 3 years ago
- 1 comment
#14 - Create loaders for external data (BAM/VCF)
Issue -
State: closed - Opened by arogozhnikov over 3 years ago
- 1 comment
#13 - Add an example of running demuxalot on public data
Issue -
State: open - Opened by arogozhnikov over 3 years ago
#12 - add github action for pypi publishing
Pull Request -
State: closed - Opened by arogozhnikov over 3 years ago
#11 - Add auto-deplyment of new versions to pypi
Issue -
State: closed - Opened by arogozhnikov over 3 years ago
#10 - Improve tests
Pull Request -
State: closed - Opened by arogozhnikov over 3 years ago
#9 - Deploy pypi
Pull Request -
State: closed - Opened by arogozhnikov over 3 years ago
#8 - Add examples
Pull Request -
State: closed - Opened by arogozhnikov over 3 years ago
#7 - better readme description
Pull Request -
State: closed - Opened by arogozhnikov over 3 years ago
#6 - add badge for test/deployment
Pull Request -
State: closed - Opened by arogozhnikov over 3 years ago
#5 - Update readme after major update
Issue -
State: closed - Opened by arogozhnikov over 4 years ago
#4 - Changes for smoother scaling and handling corner situations
Pull Request -
State: closed - Opened by arogozhnikov over 4 years ago
#3 - Joblib can't pass objects larger that 2Gb between processes
Issue -
State: closed - Opened by arogozhnikov over 4 years ago
- 1 comment
#2 - Interface changes
Pull Request -
State: closed - Opened by arogozhnikov over 4 years ago
#1 - changes to output
Pull Request -
State: closed - Opened by arogozhnikov over 4 years ago