Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / arogozhnikov/demuxalot issues and pull requests

#33 - Added a BDRhapsody_specific.py and forced BarcodeHandler to read barc…

Pull Request - State: closed - Opened by leqi0001 about 2 months ago - 1 comment

#32 - [solved] empty output after count_snps() with BD Rhapsody bam files

Issue - State: open - Opened by leqi0001 about 2 months ago - 9 comments

#31 - rewrite readme

Pull Request - State: closed - Opened by arogozhnikov 7 months ago

#30 - Examples: Add simple custom tag example

Pull Request - State: closed - Opened by mschilli87 7 months ago - 1 comment

#29 - bump version

Pull Request - State: closed - Opened by arogozhnikov 7 months ago

#28 - delete previous deploy script

Pull Request - State: closed - Opened by arogozhnikov 7 months ago

#27 - Update github workflows and move to pyproject.toml

Pull Request - State: closed - Opened by arogozhnikov 7 months ago

#26 - Non cellranger tags

Pull Request - State: closed - Opened by mschilli87 7 months ago - 3 comments

#25 - `BarcodeHandler.from_file`: Pass down parameters

Pull Request - State: closed - Opened by mschilli87 7 months ago - 2 comments

#24 - Parameterize `parse_read` for custom UMI-tags etc.

Pull Request - State: closed - Opened by mschilli87 7 months ago - 4 comments

#23 - How do I define which BAM tags contain the UMI / cell barcode?

Issue - State: closed - Opened by mschilli87 8 months ago - 16 comments
Labels: question

#22 - Demuxafy problems: can't open file 'Demuxalot.py'

Issue - State: open - Opened by MrLocuace 9 months ago - 3 comments
Labels: third-party

#21 - Demuxafy question: Is demux.py the same as Demuxalot.py?

Issue - State: open - Opened by MrLocuace 9 months ago - 3 comments
Labels: third-party

#20 - update notebook

Pull Request - State: closed - Opened by arogozhnikov over 2 years ago

#17 - Using demuxalot for ATAC data

Issue - State: open - Opened by himanshiarora7 almost 3 years ago - 3 comments
Labels: question

#16 - Questions about providing genotypes to demuxalot

Issue - State: open - Opened by cartographerJ almost 3 years ago - 4 comments
Labels: question

#15 - Parquet-ize betas (learnt genotypes data)

Issue - State: closed - Opened by arogozhnikov almost 3 years ago - 1 comment

#14 - Create loaders for external data (BAM/VCF)

Issue - State: closed - Opened by arogozhnikov over 3 years ago - 1 comment

#13 - Add an example of running demuxalot on public data

Issue - State: open - Opened by arogozhnikov over 3 years ago

#12 - add github action for pypi publishing

Pull Request - State: closed - Opened by arogozhnikov over 3 years ago

#11 - Add auto-deplyment of new versions to pypi

Issue - State: closed - Opened by arogozhnikov over 3 years ago

#10 - Improve tests

Pull Request - State: closed - Opened by arogozhnikov over 3 years ago

#9 - Deploy pypi

Pull Request - State: closed - Opened by arogozhnikov over 3 years ago

#8 - Add examples

Pull Request - State: closed - Opened by arogozhnikov over 3 years ago

#7 - better readme description

Pull Request - State: closed - Opened by arogozhnikov over 3 years ago

#6 - add badge for test/deployment

Pull Request - State: closed - Opened by arogozhnikov over 3 years ago

#5 - Update readme after major update

Issue - State: closed - Opened by arogozhnikov over 4 years ago

#4 - Changes for smoother scaling and handling corner situations

Pull Request - State: closed - Opened by arogozhnikov over 4 years ago

#3 - Joblib can't pass objects larger that 2Gb between processes

Issue - State: closed - Opened by arogozhnikov over 4 years ago - 1 comment

#2 - Interface changes

Pull Request - State: closed - Opened by arogozhnikov over 4 years ago

#1 - changes to output

Pull Request - State: closed - Opened by arogozhnikov over 4 years ago