Ecosyste.ms: Issues

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GitHub / armanbilge/b3 issues and pull requests

#26 - Support an XML templating language

Issue - State: open - Opened by armanbilge over 9 years ago
Labels: enhancement

#25 - Make main() methods into JUnit tests

Issue - State: open - Opened by armanbilge over 9 years ago
Labels: enhancement

#24 - Using resume does not continue writing log file

Issue - State: closed - Opened by armanbilge almost 10 years ago - 1 comment
Labels: bug

#23 - Deserialization for resume fails because plugins are not reloaded

Issue - State: closed - Opened by armanbilge almost 10 years ago
Labels: bug

#22 - Consider using JNA to interface with BEAGLE

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#21 - BeagleTreeLikelihood with multiple instances on multiple threads returns -Inf

Issue - State: closed - Opened by armanbilge almost 10 years ago - 1 comment
Labels: bug

#20 - Create SimpleXMLObjectParser Automatically

Issue - State: closed - Opened by armanbilge almost 10 years ago
Labels: bug, enhancement

#19 - Potential bug where threads do not terminate

Issue - State: closed - Opened by armanbilge almost 10 years ago - 1 comment
Labels: bug, question

#18 - Improve Performance of State Serialization for Resume

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#17 - NumberFormatter is evil

Issue - State: open - Opened by genomescale almost 10 years ago
Labels: enhancement

#16 - Aggressive Initialization

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#15 - Clever initialization of epsilon/L for HamiltonUpdate

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#14 - Serialization fails due to ConcurrentModificationException

Issue - State: closed - Opened by armanbilge almost 10 years ago
Labels: bug

#13 - Log files created prematurely

Issue - State: closed - Opened by armanbilge almost 10 years ago
Labels: bug

#12 - Remove unused Interfaces, Classes, and Methods

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#11 - Reinforce separation of Likelihood vs. Model interfaces

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement, question

#10 - Replace Citable/Citation interface/class with annotation

Issue - State: closed - Opened by armanbilge almost 10 years ago
Labels: enhancement

#9 - Remove references to BEAST from xml package

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#8 - Merge beast.evomodel and beast.beagle

Issue - State: open - Opened by armanbilge almost 10 years ago - 1 comment
Labels: enhancement

#7 - Namespaces for XML parsers

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#6 - Use Dirichlet prior for frequencies and relative rates

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#5 - Don't require a tree to call functions on Nodes

Issue - State: open - Opened by armanbilge almost 10 years ago
Labels: enhancement

#4 - Merge Coalescent Populations with Coalescent Population Models

Issue - State: open - Opened by walterxie almost 10 years ago
Labels: enhancement

#3 - Incompatibility to BEAST 1

Issue - State: open - Opened by walterxie almost 10 years ago
Labels: question

#2 - Simplify and merge tree classes

Issue - State: open - Opened by walterxie almost 10 years ago
Labels: enhancement

#1 - Separate calculations and states in the framework

Issue - State: open - Opened by walterxie almost 10 years ago
Labels: enhancement