Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / aristoteleo/spateo-release issues and pull requests

#177 - libGL.so.1: cannot open shared object file: No such file or directory

Issue - State: closed - Opened by vladimirkovacevic almost 2 years ago - 5 comments
Labels: Stale

#176 - Illegal instruction: 4

Issue - State: closed - Opened by QianChwnLyn almost 2 years ago - 5 comments
Labels: Stale

#175 - Spateo for Merfish

Issue - State: closed - Opened by pakiessling almost 2 years ago - 4 comments

#174 - svg

Pull Request - State: closed - Opened by HailinPan almost 2 years ago

#173 - upload codes for SVG

Pull Request - State: closed - Opened by HailinPan almost 2 years ago

#172 - Confusing number of neighbors in spateo.tools.find_neighbors

Issue - State: closed - Opened by Secretloong almost 2 years ago - 1 comment

#171 - We will need to add issue template

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 2 comments
Labels: Stale

#170 - Can't run spateo on google colab

Issue - State: closed - Opened by vladimirkovacevic almost 2 years ago - 7 comments
Labels: Stale

#169 - Spateo_v1_issues 3D reconstruction

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 1 comment

#168 - Spateo_v1_issues Cell-cell interactions

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 2 comments
Labels: Stale

#167 - Spateo_v1_issues digitization

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 1 comment
Labels: Stale

#166 - Spateo_v1_issues cell segmentation

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 2 comments
Labels: Stale

#165 - Spateo_v1_issues data

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 3 comments

#164 - Spateo_v1_issues version control

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 2 comments
Labels: Stale

#163 - Spateo_v1_issues Missing Packages

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 3 comments
Labels: Stale

#162 - Where to download the /DATA/User/zuolulu/spateo-release/spateo/tools/database/

Issue - State: closed - Opened by zhanglab2008 almost 2 years ago - 1 comment

#159 - Installation error

Issue - State: closed - Opened by BinyaminKaffe almost 2 years ago - 20 comments
Labels: good first issue, Stale

#158 - can not downloade the sample dataset

Issue - State: closed - Opened by JingGuo1997 almost 2 years ago - 4 comments

#157 - How to save the result with different name?

Issue - State: closed - Opened by Zhixuan-Jing almost 2 years ago - 5 comments

#156 - don't allow registering an already existing cmap

Issue - State: closed - Opened by Secretloong almost 2 years ago - 2 comments

#155 - Add max_num_neighbors to weighted_spatial_graph

Issue - State: closed - Opened by Secretloong almost 2 years ago - 4 comments

#154 - Type casting from UMI to AGG

Issue - State: closed - Opened by Zhixuan-Jing almost 2 years ago - 3 comments

#153 - bioconda recipe

Issue - State: closed - Opened by mjsteinbaugh about 2 years ago - 5 comments
Labels: Stale

#151 - Problem about dataset loading

Issue - State: closed - Opened by Zhixuan-Jing about 2 years ago - 10 comments

#150 - Changes to nomenclature and other minor changes

Pull Request - State: closed - Opened by dzhu8 about 2 years ago

#149 - Modeling core

Pull Request - State: closed - Opened by dzhu8 about 2 years ago - 1 comment

#148 - Modeling core

Pull Request - State: closed - Opened by dzhu8 about 2 years ago - 1 comment

#147 - Modeling core

Pull Request - State: closed - Opened by dzhu8 about 2 years ago

#146 - IO extension

Pull Request - State: closed - Opened by Jinerhal about 2 years ago

#145 - Spatial connections/neighborhood-defining/Label class

Pull Request - State: closed - Opened by dzhu8 about 2 years ago

#143 - dzhu- first contributions

Pull Request - State: closed - Opened by dzhu8 about 2 years ago - 1 comment

#142 - typing error

Issue - State: closed - Opened by jinyuanchun over 2 years ago - 4 comments

#141 - install problem

Issue - State: closed - Opened by jinyuanchun over 2 years ago - 2 comments

#139 - Recruiting Python Programmers to Develop Predictive Single Cell Spatiotemporal Analysis Toolkit

Issue - State: closed - Opened by Xiaojieqiu over 2 years ago - 1 comment
Labels: Stale

#138 - Cci 22

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#137 - Cci 22

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#136 - Cci new

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#135 - spatial lasso

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#134 - Update interpolation

Pull Request - State: closed - Opened by Yao-14 over 2 years ago

#133 - Interactive polygon selection

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#132 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#131 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#130 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#129 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#128 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#127 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#126 - updata moran utils

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#124 - Optimized Installation Flow

Issue - State: closed - Opened by liaoshangfeng over 2 years ago - 5 comments
Labels: Stale

#123 - add box_qc_regions and clean up plotting arguments

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#122 - solved

Issue - State: closed - Opened by qlan20 over 2 years ago

#121 - fix the niches_n2c

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#120 - OSError: [Errno 122] Disk quota exceeded

Issue - State: closed - Opened by tongjiezhao over 2 years ago - 1 comment
Labels: question

#119 - major cell segmentation docs upate

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#118 - move contributing to root and add contributors

Pull Request - State: closed - Opened by Lioscro over 2 years ago - 1 comment

#117 - use zinb for everything in vi

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#116 - add find_peaks function for non-boolean arrays

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#115 - add find_peaks function

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#114 - update nb initial parameters

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#113 - minor fix in check_adata_is_type

Pull Request - State: closed - Opened by Xiaojieqiu over 2 years ago

#112 - add contributor page in the documentation page

Issue - State: closed - Opened by Xiaojieqiu over 2 years ago

#111 - don't connect bgi labels in `read_bgi_agg`

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#110 - Adata type check list

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#109 - move tdr to its own module

Pull Request - State: closed - Opened by Yao-14 over 2 years ago

#108 - digitization related code

Pull Request - State: closed - Opened by Xiaojieqiu over 2 years ago - 2 comments

#107 - move segmentation to its own module

Pull Request - State: closed - Opened by Lioscro over 2 years ago - 3 comments

#106 - add BasePlot HeatMap classes

Pull Request - State: open - Opened by Xiaojieqiu over 2 years ago

#105 - update TDR and merge to the main branch

Pull Request - State: closed - Opened by Yao-14 over 2 years ago

#104 - add ‘top_n_genes’ function to cluster_degs.py

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#103 - Add more tutorials

Issue - State: closed - Opened by Xiaojieqiu over 2 years ago - 2 comments
Labels: Stale

#102 - Adata type validation

Pull Request - State: closed - Opened by Lioscro over 2 years ago - 1 comment

#101 - New tdr

Pull Request - State: closed - Opened by Yao-14 over 2 years ago

#100 - Improve import time

Issue - State: closed - Opened by Lioscro over 2 years ago - 4 comments
Labels: enhancement, help wanted, Stale

#99 - option to display absolute coordinates when plotting

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#92 - Update TDR

Pull Request - State: closed - Opened by Yao-14 over 2 years ago

#90 - add a few sample datasets to each technology

Issue - State: closed - Opened by Xiaojieqiu over 2 years ago - 4 comments
Labels: Stale

#75 - Documentation

Pull Request - State: closed - Opened by Lioscro over 2 years ago - 11 comments

#71 - add validators

Issue - State: closed - Opened by Lioscro over 2 years ago - 3 comments
Labels: enhancement, Stale

#66 - add figure configuration

Pull Request - State: closed - Opened by Xiaojieqiu over 2 years ago - 3 comments

#60 - Create staining.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago - 2 comments

#42 - update data io

Pull Request - State: closed - Opened by WangShuai-3 over 2 years ago

#28 - Function to calculate the spatial diffusion

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago - 2 comments
Labels: Stale

#26 - Add features of the cell segmentation

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago - 2 comments
Labels: Stale

#18 - Implement interactive exploration method

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago - 2 comments
Labels: enhancement, Stale

#17 - Support read in other data type

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago - 3 comments
Labels: good first issue, help wanted, Stale

#16 - clean up requirements

Issue - State: closed - Opened by Lioscro almost 3 years ago - 1 comment
Labels: enhancement, Stale

#15 - standardize progress bars

Issue - State: closed - Opened by Lioscro almost 3 years ago - 2 comments
Labels: enhancement, help wanted, Stale

#13 - use pyvista to create 2D/3D quiver or streamline plot

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago - 2 comments
Labels: enhancement, Stale

#12 - build continuous 3D model of gene expression

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago - 1 comment
Labels: enhancement, Stale

#11 - add code to support volumetric analysis

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago - 2 comments
Labels: enhancement

#10 - Tissue bounding box selection

Issue - State: closed - Opened by Lioscro almost 3 years ago - 11 comments
Labels: enhancement, help wanted

#9 - Implement logging

Issue - State: closed - Opened by Lioscro almost 3 years ago - 3 comments
Labels: enhancement

#8 - Set up documentation & tutorials

Issue - State: closed - Opened by Lioscro almost 3 years ago
Labels: documentation