Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / aristoteleo/spateo-release issues and pull requests
#207 - illegal hardware instruction python
Issue -
State: closed - Opened by sinanugur over 1 year ago
- 4 comments
Labels: Stale
#206 - Add mpi4py dependency
Pull Request -
State: closed - Opened by Sichao25 over 1 year ago
- 1 comment
#205 - Update paste.py
Pull Request -
State: closed - Opened by zEpoch over 1 year ago
- 1 comment
#204 - Merging my updates
Pull Request -
State: closed - Opened by dzhu8 over 1 year ago
- 2 comments
#203 - st.io.read_bgi_agg: Padding stain image
Issue -
State: closed - Opened by sunshx-bioinfo over 1 year ago
- 2 comments
Labels: Stale
#202 - st.cs.expand_labels: TerminatedWorkerError
Issue -
State: closed - Opened by sunshx-bioinfo over 1 year ago
- 2 comments
Labels: Stale
#201 - http error when using st.sample_data.drosophila()
Issue -
State: closed - Opened by MingLi-929 over 1 year ago
- 3 comments
#200 - 如何在不能联网的集群使用需要预下载模型的函数进行细胞分割
Issue -
State: closed - Opened by yty420 over 1 year ago
- 3 comments
Labels: Stale
#199 - score_and_mask_pixels: ValueError: autodetected range of [nan, nan] is not finite
Issue -
State: closed - Opened by legbar over 1 year ago
- 2 comments
Labels: Stale
#198 - installation issue
Issue -
State: closed - Opened by wqy399 over 1 year ago
- 4 comments
Labels: Stale
#197 - 安装问题
Issue -
State: closed - Opened by lvmt over 1 year ago
- 6 comments
#196 - Debug external import issue
Pull Request -
State: closed - Opened by Sichao25 over 1 year ago
#195 - Issues in Clustering and digitization
Issue -
State: closed - Opened by AkkSeannn over 1 year ago
- 10 comments
Labels: Stale
#194 - installation issue
Issue -
State: closed - Opened by JLiLab over 1 year ago
- 2 comments
Labels: Stale
#193 - 使用深度学习方法StarDist进行分割时出现的错误
Issue -
State: closed - Opened by YAOJ-bioin over 1 year ago
- 2 comments
Labels: Stale
#192 - Illegal instruction (core dumped)
Issue -
State: closed - Opened by YAOJ-bioin over 1 year ago
- 3 comments
Labels: Stale
#191 - Non-rigid Morpho Align
Issue -
State: closed - Opened by Harrison-Q-Ma over 1 year ago
- 4 comments
Labels: Stale
#190 - Bump version: 1.0.2 → 1.1.0
Pull Request -
State: closed - Opened by Sichao25 over 1 year ago
#189 - Reformat
Pull Request -
State: closed - Opened by Sichao25 over 1 year ago
#188 - Remove non-conda-forge package from requirement
Pull Request -
State: closed - Opened by Sichao25 over 1 year ago
#187 - Copy logging-release code
Pull Request -
State: closed - Opened by Sichao25 over 1 year ago
#186 - Update dyn pp external import
Pull Request -
State: closed - Opened by Sichao25 over 1 year ago
#185 - AttributeError: 'Niche_Model' object has no attribute 'type_coupling'
Issue -
State: closed - Opened by jefferyUstc over 1 year ago
- 2 comments
Labels: Stale
#184 - Question for `generate_spatial_weights_fixed_radius` when doing CCI analysis
Issue -
State: closed - Opened by jefferyUstc over 1 year ago
- 2 comments
Labels: Stale
#183 - Image registration of ssNDA and RNA in Spateo
Issue -
State: closed - Opened by Taoli0113 almost 2 years ago
- 1 comment
Labels: Stale
#182 - module 'dynamo.pp' has no attribute 'normalize_cell_expr_by_size_factors'
Issue -
State: closed - Opened by xuansuyang almost 2 years ago
- 11 comments
Labels: Stale
#181 - update anndata dependency
Pull Request -
State: closed - Opened by Sichao25 almost 2 years ago
- 2 comments
#180 - Make sure the L-R database are included in the package
Issue -
State: closed - Opened by Xiaojieqiu almost 2 years ago
- 3 comments
Labels: Stale
#179 - Conda recipe
Pull Request -
State: open - Opened by Ukyeon almost 2 years ago
#178 - 3D reconstruction
Issue -
State: closed - Opened by JingGuo1997 almost 2 years ago
- 2 comments
#177 - libGL.so.1: cannot open shared object file: No such file or directory
Issue -
State: closed - Opened by vladimirkovacevic about 2 years ago
- 5 comments
Labels: Stale
#176 - Illegal instruction: 4
Issue -
State: closed - Opened by QianChwnLyn about 2 years ago
- 5 comments
Labels: Stale
#175 - Spateo for Merfish
Issue -
State: closed - Opened by pakiessling about 2 years ago
- 4 comments
#174 - svg
Pull Request -
State: closed - Opened by HailinPan about 2 years ago
#173 - upload codes for SVG
Pull Request -
State: closed - Opened by HailinPan about 2 years ago
#172 - Confusing number of neighbors in spateo.tools.find_neighbors
Issue -
State: closed - Opened by Secretloong about 2 years ago
- 1 comment
#171 - We will need to add issue template
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 2 comments
Labels: Stale
#170 - Can't run spateo on google colab
Issue -
State: closed - Opened by vladimirkovacevic about 2 years ago
- 7 comments
Labels: Stale
#169 - Spateo_v1_issues 3D reconstruction
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 1 comment
#168 - Spateo_v1_issues Cell-cell interactions
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 2 comments
Labels: Stale
#167 - Spateo_v1_issues digitization
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 1 comment
Labels: Stale
#166 - Spateo_v1_issues cell segmentation
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 2 comments
Labels: Stale
#165 - Spateo_v1_issues data
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 3 comments
#164 - Spateo_v1_issues version control
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 2 comments
Labels: Stale
#163 - Spateo_v1_issues Missing Packages
Issue -
State: closed - Opened by Xiaojieqiu about 2 years ago
- 3 comments
Labels: Stale
#162 - Where to download the /DATA/User/zuolulu/spateo-release/spateo/tools/database/
Issue -
State: closed - Opened by zhanglab2008 about 2 years ago
- 1 comment
#159 - Installation error
Issue -
State: closed - Opened by BinyaminKaffe about 2 years ago
- 20 comments
Labels: good first issue, Stale
#158 - can not downloade the sample dataset
Issue -
State: closed - Opened by JingGuo1997 about 2 years ago
- 4 comments
#157 - How to save the result with different name?
Issue -
State: closed - Opened by Zhixuan-Jing about 2 years ago
- 5 comments
#156 - don't allow registering an already existing cmap
Issue -
State: closed - Opened by Secretloong about 2 years ago
- 2 comments
#155 - Add max_num_neighbors to weighted_spatial_graph
Issue -
State: closed - Opened by Secretloong about 2 years ago
- 4 comments
#154 - Type casting from UMI to AGG
Issue -
State: closed - Opened by Zhixuan-Jing about 2 years ago
- 3 comments
#153 - bioconda recipe
Issue -
State: closed - Opened by mjsteinbaugh over 2 years ago
- 5 comments
Labels: Stale
#151 - Problem about dataset loading
Issue -
State: closed - Opened by Zhixuan-Jing over 2 years ago
- 10 comments
#150 - Changes to nomenclature and other minor changes
Pull Request -
State: closed - Opened by dzhu8 over 2 years ago
#149 - Modeling core
Pull Request -
State: closed - Opened by dzhu8 over 2 years ago
- 1 comment
#148 - Modeling core
Pull Request -
State: closed - Opened by dzhu8 over 2 years ago
- 1 comment
#147 - Modeling core
Pull Request -
State: closed - Opened by dzhu8 over 2 years ago
#146 - IO extension
Pull Request -
State: closed - Opened by Jinerhal over 2 years ago
#145 - Spatial connections/neighborhood-defining/Label class
Pull Request -
State: closed - Opened by dzhu8 over 2 years ago
#144 - Add the plotting function to visualize the grid wrap of the thin plate spline inteperpolation
Pull Request -
State: open - Opened by Xiaojieqiu over 2 years ago
#143 - dzhu- first contributions
Pull Request -
State: closed - Opened by dzhu8 over 2 years ago
- 1 comment
#142 - typing error
Issue -
State: closed - Opened by jinyuanchun over 2 years ago
- 4 comments
#141 - install problem
Issue -
State: closed - Opened by jinyuanchun over 2 years ago
- 2 comments
#140 - This push request add the ligand/receptor data to the package and uses package data within functions
Pull Request -
State: open - Opened by Xiaojieqiu over 2 years ago
- 1 comment
#139 - Recruiting Python Programmers to Develop Predictive Single Cell Spatiotemporal Analysis Toolkit
Issue -
State: closed - Opened by Xiaojieqiu over 2 years ago
- 1 comment
Labels: Stale
#138 - Cci 22
Pull Request -
State: closed - Opened by luluZuo over 2 years ago
#137 - Cci 22
Pull Request -
State: closed - Opened by luluZuo over 2 years ago
#136 - Cci new
Pull Request -
State: closed - Opened by luluZuo over 2 years ago
#135 - spatial lasso
Pull Request -
State: closed - Opened by luluZuo over 2 years ago
#134 - Update interpolation
Pull Request -
State: closed - Opened by Yao-14 over 2 years ago
#133 - Interactive polygon selection
Pull Request -
State: closed - Opened by Lioscro over 2 years ago
#132 - add some functions to moran.py and utils.py
Pull Request -
State: closed - Opened by HailinPan over 2 years ago
#131 - add some functions to moran.py and utils.py
Pull Request -
State: closed - Opened by HailinPan over 2 years ago
#130 - add some functions to moran.py and utils.py
Pull Request -
State: closed - Opened by HailinPan over 2 years ago
#129 - add some functions to moran.py and utils.py
Pull Request -
State: closed - Opened by HailinPan over 2 years ago
#128 - add some functions to moran.py and utils.py
Pull Request -
State: closed - Opened by HailinPan over 2 years ago
#127 - add some functions to moran.py and utils.py
Pull Request -
State: closed - Opened by HailinPan over 2 years ago
#126 - updata moran utils
Pull Request -
State: closed - Opened by HailinPan over 2 years ago
#124 - Optimized Installation Flow
Issue -
State: closed - Opened by liaoshangfeng over 2 years ago
- 5 comments
Labels: Stale
#123 - add box_qc_regions and clean up plotting arguments
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#122 - solved
Issue -
State: closed - Opened by qlan20 almost 3 years ago
#121 - fix the niches_n2c
Pull Request -
State: closed - Opened by luluZuo almost 3 years ago
#120 - OSError: [Errno 122] Disk quota exceeded
Issue -
State: closed - Opened by tongjiezhao almost 3 years ago
- 1 comment
Labels: question
#119 - major cell segmentation docs upate
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#118 - move contributing to root and add contributors
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
- 1 comment
#117 - use zinb for everything in vi
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#116 - add find_peaks function for non-boolean arrays
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#115 - add find_peaks function
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#114 - update nb initial parameters
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#113 - minor fix in check_adata_is_type
Pull Request -
State: closed - Opened by Xiaojieqiu almost 3 years ago
#112 - add contributor page in the documentation page
Issue -
State: closed - Opened by Xiaojieqiu almost 3 years ago
#111 - don't connect bgi labels in `read_bgi_agg`
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#110 - Adata type check list
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
#109 - move tdr to its own module
Pull Request -
State: closed - Opened by Yao-14 almost 3 years ago
#108 - digitization related code
Pull Request -
State: closed - Opened by Xiaojieqiu almost 3 years ago
- 2 comments
#107 - move segmentation to its own module
Pull Request -
State: closed - Opened by Lioscro almost 3 years ago
- 3 comments
#106 - add BasePlot HeatMap classes
Pull Request -
State: open - Opened by Xiaojieqiu almost 3 years ago
#105 - update TDR and merge to the main branch
Pull Request -
State: closed - Opened by Yao-14 almost 3 years ago
#104 - add ‘top_n_genes’ function to cluster_degs.py
Pull Request -
State: closed - Opened by luluZuo almost 3 years ago