Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / aristoteleo/spateo-release issues and pull requests

#207 - illegal hardware instruction python

Issue - State: closed - Opened by sinanugur over 1 year ago - 4 comments
Labels: Stale

#206 - Add mpi4py dependency

Pull Request - State: closed - Opened by Sichao25 over 1 year ago - 1 comment

#205 - Update paste.py

Pull Request - State: closed - Opened by zEpoch over 1 year ago - 1 comment

#204 - Merging my updates

Pull Request - State: closed - Opened by dzhu8 over 1 year ago - 2 comments

#203 - st.io.read_bgi_agg: Padding stain image

Issue - State: closed - Opened by sunshx-bioinfo over 1 year ago - 2 comments
Labels: Stale

#202 - st.cs.expand_labels: TerminatedWorkerError

Issue - State: closed - Opened by sunshx-bioinfo over 1 year ago - 2 comments
Labels: Stale

#201 - http error when using st.sample_data.drosophila()

Issue - State: closed - Opened by MingLi-929 over 1 year ago - 3 comments

#200 - 如何在不能联网的集群使用需要预下载模型的函数进行细胞分割

Issue - State: closed - Opened by yty420 over 1 year ago - 3 comments
Labels: Stale

#199 - score_and_mask_pixels: ValueError: autodetected range of [nan, nan] is not finite

Issue - State: closed - Opened by legbar over 1 year ago - 2 comments
Labels: Stale

#198 - installation issue

Issue - State: closed - Opened by wqy399 over 1 year ago - 4 comments
Labels: Stale

#197 - 安装问题

Issue - State: closed - Opened by lvmt over 1 year ago - 6 comments

#196 - Debug external import issue

Pull Request - State: closed - Opened by Sichao25 over 1 year ago

#195 - Issues in Clustering and digitization

Issue - State: closed - Opened by AkkSeannn over 1 year ago - 10 comments
Labels: Stale

#194 - installation issue

Issue - State: closed - Opened by JLiLab over 1 year ago - 2 comments
Labels: Stale

#193 - 使用深度学习方法StarDist进行分割时出现的错误

Issue - State: closed - Opened by YAOJ-bioin over 1 year ago - 2 comments
Labels: Stale

#192 - Illegal instruction (core dumped)

Issue - State: closed - Opened by YAOJ-bioin over 1 year ago - 3 comments
Labels: Stale

#191 - Non-rigid Morpho Align

Issue - State: closed - Opened by Harrison-Q-Ma over 1 year ago - 4 comments
Labels: Stale

#190 - Bump version: 1.0.2 → 1.1.0

Pull Request - State: closed - Opened by Sichao25 over 1 year ago

#189 - Reformat

Pull Request - State: closed - Opened by Sichao25 over 1 year ago

#188 - Remove non-conda-forge package from requirement

Pull Request - State: closed - Opened by Sichao25 over 1 year ago

#187 - Copy logging-release code

Pull Request - State: closed - Opened by Sichao25 over 1 year ago

#186 - Update dyn pp external import

Pull Request - State: closed - Opened by Sichao25 over 1 year ago

#185 - AttributeError: 'Niche_Model' object has no attribute 'type_coupling'

Issue - State: closed - Opened by jefferyUstc over 1 year ago - 2 comments
Labels: Stale

#184 - Question for `generate_spatial_weights_fixed_radius` when doing CCI analysis

Issue - State: closed - Opened by jefferyUstc over 1 year ago - 2 comments
Labels: Stale

#183 - Image registration of ssNDA and RNA in Spateo

Issue - State: closed - Opened by Taoli0113 almost 2 years ago - 1 comment
Labels: Stale

#182 - module 'dynamo.pp' has no attribute 'normalize_cell_expr_by_size_factors'

Issue - State: closed - Opened by xuansuyang almost 2 years ago - 11 comments
Labels: Stale

#181 - update anndata dependency

Pull Request - State: closed - Opened by Sichao25 almost 2 years ago - 2 comments

#180 - Make sure the L-R database are included in the package

Issue - State: closed - Opened by Xiaojieqiu almost 2 years ago - 3 comments
Labels: Stale

#179 - Conda recipe

Pull Request - State: open - Opened by Ukyeon almost 2 years ago

#178 - 3D reconstruction

Issue - State: closed - Opened by JingGuo1997 almost 2 years ago - 2 comments

#177 - libGL.so.1: cannot open shared object file: No such file or directory

Issue - State: closed - Opened by vladimirkovacevic about 2 years ago - 5 comments
Labels: Stale

#176 - Illegal instruction: 4

Issue - State: closed - Opened by QianChwnLyn about 2 years ago - 5 comments
Labels: Stale

#175 - Spateo for Merfish

Issue - State: closed - Opened by pakiessling about 2 years ago - 4 comments

#174 - svg

Pull Request - State: closed - Opened by HailinPan about 2 years ago

#173 - upload codes for SVG

Pull Request - State: closed - Opened by HailinPan about 2 years ago

#172 - Confusing number of neighbors in spateo.tools.find_neighbors

Issue - State: closed - Opened by Secretloong about 2 years ago - 1 comment

#171 - We will need to add issue template

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 2 comments
Labels: Stale

#170 - Can't run spateo on google colab

Issue - State: closed - Opened by vladimirkovacevic about 2 years ago - 7 comments
Labels: Stale

#169 - Spateo_v1_issues 3D reconstruction

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 1 comment

#168 - Spateo_v1_issues Cell-cell interactions

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 2 comments
Labels: Stale

#167 - Spateo_v1_issues digitization

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 1 comment
Labels: Stale

#166 - Spateo_v1_issues cell segmentation

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 2 comments
Labels: Stale

#165 - Spateo_v1_issues data

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 3 comments

#164 - Spateo_v1_issues version control

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 2 comments
Labels: Stale

#163 - Spateo_v1_issues Missing Packages

Issue - State: closed - Opened by Xiaojieqiu about 2 years ago - 3 comments
Labels: Stale

#159 - Installation error

Issue - State: closed - Opened by BinyaminKaffe about 2 years ago - 20 comments
Labels: good first issue, Stale

#158 - can not downloade the sample dataset

Issue - State: closed - Opened by JingGuo1997 about 2 years ago - 4 comments

#157 - How to save the result with different name?

Issue - State: closed - Opened by Zhixuan-Jing about 2 years ago - 5 comments

#156 - don't allow registering an already existing cmap

Issue - State: closed - Opened by Secretloong about 2 years ago - 2 comments

#155 - Add max_num_neighbors to weighted_spatial_graph

Issue - State: closed - Opened by Secretloong about 2 years ago - 4 comments

#154 - Type casting from UMI to AGG

Issue - State: closed - Opened by Zhixuan-Jing about 2 years ago - 3 comments

#153 - bioconda recipe

Issue - State: closed - Opened by mjsteinbaugh over 2 years ago - 5 comments
Labels: Stale

#151 - Problem about dataset loading

Issue - State: closed - Opened by Zhixuan-Jing over 2 years ago - 10 comments

#150 - Changes to nomenclature and other minor changes

Pull Request - State: closed - Opened by dzhu8 over 2 years ago

#149 - Modeling core

Pull Request - State: closed - Opened by dzhu8 over 2 years ago - 1 comment

#148 - Modeling core

Pull Request - State: closed - Opened by dzhu8 over 2 years ago - 1 comment

#147 - Modeling core

Pull Request - State: closed - Opened by dzhu8 over 2 years ago

#146 - IO extension

Pull Request - State: closed - Opened by Jinerhal over 2 years ago

#145 - Spatial connections/neighborhood-defining/Label class

Pull Request - State: closed - Opened by dzhu8 over 2 years ago

#143 - dzhu- first contributions

Pull Request - State: closed - Opened by dzhu8 over 2 years ago - 1 comment

#142 - typing error

Issue - State: closed - Opened by jinyuanchun over 2 years ago - 4 comments

#141 - install problem

Issue - State: closed - Opened by jinyuanchun over 2 years ago - 2 comments

#139 - Recruiting Python Programmers to Develop Predictive Single Cell Spatiotemporal Analysis Toolkit

Issue - State: closed - Opened by Xiaojieqiu over 2 years ago - 1 comment
Labels: Stale

#138 - Cci 22

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#137 - Cci 22

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#136 - Cci new

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#135 - spatial lasso

Pull Request - State: closed - Opened by luluZuo over 2 years ago

#134 - Update interpolation

Pull Request - State: closed - Opened by Yao-14 over 2 years ago

#133 - Interactive polygon selection

Pull Request - State: closed - Opened by Lioscro over 2 years ago

#132 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#131 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#130 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#129 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#128 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#127 - add some functions to moran.py and utils.py

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#126 - updata moran utils

Pull Request - State: closed - Opened by HailinPan over 2 years ago

#124 - Optimized Installation Flow

Issue - State: closed - Opened by liaoshangfeng over 2 years ago - 5 comments
Labels: Stale

#123 - add box_qc_regions and clean up plotting arguments

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#122 - solved

Issue - State: closed - Opened by qlan20 almost 3 years ago

#121 - fix the niches_n2c

Pull Request - State: closed - Opened by luluZuo almost 3 years ago

#120 - OSError: [Errno 122] Disk quota exceeded

Issue - State: closed - Opened by tongjiezhao almost 3 years ago - 1 comment
Labels: question

#119 - major cell segmentation docs upate

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#118 - move contributing to root and add contributors

Pull Request - State: closed - Opened by Lioscro almost 3 years ago - 1 comment

#117 - use zinb for everything in vi

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#116 - add find_peaks function for non-boolean arrays

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#115 - add find_peaks function

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#114 - update nb initial parameters

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#113 - minor fix in check_adata_is_type

Pull Request - State: closed - Opened by Xiaojieqiu almost 3 years ago

#112 - add contributor page in the documentation page

Issue - State: closed - Opened by Xiaojieqiu almost 3 years ago

#111 - don't connect bgi labels in `read_bgi_agg`

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#110 - Adata type check list

Pull Request - State: closed - Opened by Lioscro almost 3 years ago

#109 - move tdr to its own module

Pull Request - State: closed - Opened by Yao-14 almost 3 years ago

#108 - digitization related code

Pull Request - State: closed - Opened by Xiaojieqiu almost 3 years ago - 2 comments

#107 - move segmentation to its own module

Pull Request - State: closed - Opened by Lioscro almost 3 years ago - 3 comments

#106 - add BasePlot HeatMap classes

Pull Request - State: open - Opened by Xiaojieqiu almost 3 years ago

#105 - update TDR and merge to the main branch

Pull Request - State: closed - Opened by Yao-14 almost 3 years ago

#104 - add ‘top_n_genes’ function to cluster_degs.py

Pull Request - State: closed - Opened by luluZuo almost 3 years ago