aresti/primalscheme issues and pull requests

#42 - Tiling primer design for whole genome

Issue - State: open - Opened by SwathiNadendla 26 days ago

#41 - Repair flag

Issue - State: open - Opened by EldeVries 2 months ago

#40 - Update build system to flit_core

Pull Request - State: open - Opened by takluyver 8 months ago

#39 - error with Apple M1

Issue - State: open - Opened by virologist 9 months ago

#38 - Troubleshooting Error

Issue - State: open - Opened by bmbrown317 about 1 year ago - 1 comment

#37 - Primalscheme

Issue - State: open - Opened by ketandhede over 1 year ago

#36 - https://primalscheme.com/ not working

Issue - State: open - Opened by nathania-dabilla about 2 years ago - 4 comments

#35 - Primer Schemes for Divergent Viruses

Issue - State: open - Opened by AMPByrne over 2 years ago - 1 comment

#34 - Sanger sequencing

Issue - State: open - Opened by isabelluo over 2 years ago

#33 - Excluding reference: unable to align.

Issue - State: open - Opened by SticaC over 2 years ago

#32 - annealing temperature default

Issue - State: open - Opened by isabelluo over 2 years ago - 1 comment

#31 - suggestion to hair pin temperature

Issue - State: closed - Opened by isabelluo over 2 years ago - 4 comments

#30 - Is --repair available?

Issue - State: open - Opened by jasonsydes almost 3 years ago - 5 comments

#29 - Enable schemes for segmented viruses

Issue - State: open - Opened by joshquick over 3 years ago - 1 comment

#28 - Add homodimer to hard filter and use 3' exact matches for heterodimer checks

Pull Request - State: closed - Opened by joshquick over 3 years ago - 3 comments

#27 - Feat improved indel handling

Pull Request - State: closed - Opened by aresti over 3 years ago - 1 comment

#26 - Adapt method for targetted tiled sequencing?

Issue - State: open - Opened by matbeale over 3 years ago - 6 comments
Labels: enhancement

#25 - Max Poly-X

Issue - State: closed - Opened by JFresnedo about 4 years ago - 1 comment

#24 - No overlap promt

Issue - State: open - Opened by nmitr about 4 years ago - 2 comments

#23 - Allow inputs with IUPAC ambiguity codes

Pull Request - State: closed - Opened by aresti about 4 years ago - 1 comment

#22 - No error raised when >2 --amplicon size values passed to CLI

Issue - State: open - Opened by aresti over 4 years ago

#21 - Log only displays top 10 candidates even when >= 10 skipped due to interactions

Issue - State: open - Opened by aresti over 4 years ago

#20 - Silent switch which turns off all output to STDOUT

Issue - State: open - Opened by joshquick over 4 years ago

#19 - Currently allows blank prefix which results in hidden files

Issue - State: closed - Opened by joshquick over 4 years ago - 1 comment

#18 - Primers overlap within pools when very large overlaps are requested

Issue - State: closed - Opened by joshquick over 4 years ago - 1 comment

#17 - Change --min-overlap to --target-overlap

Issue - State: closed - Opened by joshquick over 4 years ago - 1 comment

#16 - Use PRIMER_MIN_THREE_PRIME_DISTANCE to ensure unique pairs

Issue - State: closed - Opened by joshquick over 4 years ago - 1 comment

#15 - Last region should prefer to maintain overlap

Issue - State: closed - Opened by aresti over 4 years ago - 1 comment

#14 - Show version with -V

Issue - State: closed - Opened by joshquick over 4 years ago

#13 - Check for heterodimers within same pool

Issue - State: closed - Opened by joshquick over 4 years ago - 1 comment

#12 - GC-skew shown in PDF not %GC

Issue - State: closed - Opened by joshquick over 4 years ago

#11 - BED file format needs strand

Issue - State: closed - Opened by joshquick over 4 years ago

#10 - could not find cpp_functions.so - please reinstall

Issue - State: closed - Opened by aiqubo over 4 years ago - 4 comments

#9 - Costa todo list

Issue - State: closed - Opened by joshquick over 5 years ago