Ecosyste.ms: Issues
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GitHub / arendsee/phylostratr issues and pull requests
#31 - Error in `sql_integer_list(x)` when trying `strata_convert()`
Issue -
State: open - Opened by wolfylair 5 months ago
- 1 comment
#31 - Error in `sql_integer_list(x)` when trying `strata_convert()`
Issue -
State: open - Opened by wolfylair 5 months ago
- 1 comment
#30 - "ncbi_tree" function error: Error in x$id : $ operator is invalid for atomic vectors
Issue -
State: open - Opened by minzooey about 1 year ago
- 1 comment
#30 - "ncbi_tree" function error: Error in x$id : $ operator is invalid for atomic vectors
Issue -
State: open - Opened by minzooey about 1 year ago
- 1 comment
#29 - Error: The focal species is not present in UniProt
Issue -
State: open - Opened by CWYuan08 about 1 year ago
- 3 comments
#29 - Error: The focal species is not present in UniProt
Issue -
State: open - Opened by CWYuan08 about 1 year ago
- 3 comments
#28 - Error in if (class(strata) != "Strata") { : the condition has length > 1
Issue -
State: open - Opened by Dabaixian over 1 year ago
- 1 comment
#28 - Error in if (class(strata) != "Strata") { : the condition has length > 1
Issue -
State: open - Opened by Dabaixian over 1 year ago
- 1 comment
#27 - Error in (function (fastafile, blastdb = "blastdb", verbose = FALSE) : Failed to make blast database blastdb/Araport11_genes.201606.pep.fasta In addition: Warning message: In system2("makeblastdb", stderr = TRUE, stdout = TRUE, args = c("-dbtype", : running command '"makeblastdb" -dbtype prot -in Araport11_genes.201606.pep.fasta -out blastdb/Araport11_genes.201606.pep.fasta' had status 1
Issue -
State: open - Opened by xuezhang335 almost 2 years ago
- 10 comments
#27 - Error in (function (fastafile, blastdb = "blastdb", verbose = FALSE) : Failed to make blast database blastdb/Araport11_genes.201606.pep.fasta In addition: Warning message: In system2("makeblastdb", stderr = TRUE, stdout = TRUE, args = c("-dbtype", : running command '"makeblastdb" -dbtype prot -in Araport11_genes.201606.pep.fasta -out blastdb/Araport11_genes.201606.pep.fasta' had status 1
Issue -
State: open - Opened by xuezhang335 almost 2 years ago
- 10 comments
#26 - Help!!!! HTTP 400
Issue -
State: closed - Opened by wangchengww about 2 years ago
- 1 comment
#26 - Help!!!! HTTP 400
Issue -
State: closed - Opened by wangchengww about 2 years ago
- 1 comment
#25 - Error in readLines(con) : HTTP error 400.
Issue -
State: closed - Opened by kdarragh1994 about 2 years ago
- 14 comments
#25 - Error in readLines(con) : HTTP error 400.
Issue -
State: closed - Opened by kdarragh1994 about 2 years ago
- 14 comments
#24 - May I use Phylostratr to study the genomic phylostratigraphy of Mycobacterium tuberculosis?
Issue -
State: open - Opened by TaoCheng98 about 2 years ago
#24 - May I use Phylostratr to study the genomic phylostratigraphy of Mycobacterium tuberculosis?
Issue -
State: open - Opened by TaoCheng98 about 2 years ago
#23 - Error when importing external blast results
Issue -
State: open - Opened by fka21 almost 3 years ago
#23 - Error when importing external blast results
Issue -
State: open - Opened by fka21 almost 3 years ago
#22 - strata_blast issue, similar to #15
Issue -
State: open - Opened by GavinLu42 almost 3 years ago
#22 - strata_blast issue, similar to #15
Issue -
State: open - Opened by GavinLu42 almost 3 years ago
#21 - Duplicated factor levels while calling stratify()
Issue -
State: open - Opened by fka21 almost 4 years ago
#21 - Duplicated factor levels while calling stratify()
Issue -
State: open - Opened by fka21 almost 4 years ago
#20 - No alias or index file found
Issue -
State: open - Opened by paolacornejo about 4 years ago
#20 - No alias or index file found
Issue -
State: open - Opened by paolacornejo about 4 years ago
#19 - Error: 'classification' is not an exported object from 'namespace:taxizedb'
Issue -
State: closed - Opened by paolacornejo about 4 years ago
- 1 comment
#19 - Error: 'classification' is not an exported object from 'namespace:taxizedb'
Issue -
State: closed - Opened by paolacornejo about 4 years ago
- 1 comment
#18 - qseqid problem
Issue -
State: closed - Opened by CWYuan08 about 4 years ago
- 8 comments
#18 - qseqid problem
Issue -
State: closed - Opened by CWYuan08 about 4 years ago
- 8 comments
#17 - BLAST Database error
Issue -
State: open - Opened by maxnest about 4 years ago
- 3 comments
#17 - BLAST Database error
Issue -
State: open - Opened by maxnest about 4 years ago
- 3 comments
#16 - [Question]NCBI nr database VS uniprot
Issue -
State: closed - Opened by haojingshao over 4 years ago
- 1 comment
#16 - [Question]NCBI nr database VS uniprot
Issue -
State: closed - Opened by haojingshao over 4 years ago
- 1 comment
#15 - strata_blast issue
Issue -
State: closed - Opened by CWYuan08 over 4 years ago
- 18 comments
#15 - strata_blast issue
Issue -
State: closed - Opened by CWYuan08 over 4 years ago
- 18 comments
#14 - Empty faa file for 1008392 produces error with diamond
Issue -
State: closed - Opened by urmi-21 over 4 years ago
- 2 comments
#14 - Empty faa file for 1008392 produces error with diamond
Issue -
State: closed - Opened by urmi-21 over 4 years ago
- 2 comments
#13 - Add support for diamond
Pull Request -
State: closed - Opened by urmi-21 over 4 years ago
- 4 comments
#13 - Add support for diamond
Pull Request -
State: closed - Opened by urmi-21 over 4 years ago
- 4 comments
#12 - Issues in compiling results
Issue -
State: open - Opened by priyanka8590 about 5 years ago
#12 - Issues in compiling results
Issue -
State: open - Opened by priyanka8590 about 5 years ago
#11 - Issue in compiling phylostratr results
Issue -
State: closed - Opened by priyanka8590 about 5 years ago
- 2 comments
#11 - Issue in compiling phylostratr results
Issue -
State: closed - Opened by priyanka8590 about 5 years ago
- 2 comments
#10 - Invalid Strata object
Issue -
State: open - Opened by champ52018 about 5 years ago
- 8 comments
#10 - Invalid Strata object
Issue -
State: open - Opened by champ52018 about 5 years ago
- 8 comments
#9 - swap `BiocInstaller` with `BiocManager`
Issue -
State: closed - Opened by aseetharam over 5 years ago
- 8 comments
#9 - swap `BiocInstaller` with `BiocManager`
Issue -
State: closed - Opened by aseetharam over 5 years ago
- 8 comments
#8 - Heatmap layout
Issue -
State: open - Opened by Piergiorge over 5 years ago
- 8 comments
Labels: bug
#7 - Error (?) - strata_besthits
Issue -
State: closed - Opened by Piergiorge almost 6 years ago
- 2 comments
#7 - Error (?) - strata_besthits
Issue -
State: closed - Opened by Piergiorge almost 6 years ago
- 2 comments
#6 - Cannot resolve tree ids in `merge_besthits`
Issue -
State: closed - Opened by palfalvi almost 6 years ago
- 15 comments
Labels: bug
#5 - How much local storage does it normally take?
Issue -
State: closed - Opened by yenagra about 6 years ago
- 2 comments
#4 - Possible bug? number of genes per strata is way higher than the total number of genes
Issue -
State: closed - Opened by aseetharam over 6 years ago
- 20 comments
#3 - Update strata.R
Pull Request -
State: closed - Opened by lijing28101 over 6 years ago
- 2 comments
#2 - Installation issue: phylostratr is fully compatible only with latest ggtree and treeio
Issue -
State: closed - Opened by urmi-21 over 6 years ago
- 4 comments
#1 - Let phylostratr read blast outputs directly!
Issue -
State: closed - Opened by urmi-21 over 6 years ago
- 5 comments
Labels: enhancement