Ecosyste.ms: Issues

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GitHub / arendsee/phylostratr issues and pull requests

#31 - Error in `sql_integer_list(x)` when trying `strata_convert()`

Issue - State: open - Opened by wolfylair 5 months ago - 1 comment

#31 - Error in `sql_integer_list(x)` when trying `strata_convert()`

Issue - State: open - Opened by wolfylair 5 months ago - 1 comment

#29 - Error: The focal species is not present in UniProt

Issue - State: open - Opened by CWYuan08 about 1 year ago - 3 comments

#29 - Error: The focal species is not present in UniProt

Issue - State: open - Opened by CWYuan08 about 1 year ago - 3 comments

#28 - Error in if (class(strata) != "Strata") { : the condition has length > 1

Issue - State: open - Opened by Dabaixian over 1 year ago - 1 comment

#28 - Error in if (class(strata) != "Strata") { : the condition has length > 1

Issue - State: open - Opened by Dabaixian over 1 year ago - 1 comment

#26 - Help!!!! HTTP 400

Issue - State: closed - Opened by wangchengww about 2 years ago - 1 comment

#26 - Help!!!! HTTP 400

Issue - State: closed - Opened by wangchengww about 2 years ago - 1 comment

#25 - Error in readLines(con) : HTTP error 400.

Issue - State: closed - Opened by kdarragh1994 about 2 years ago - 14 comments

#25 - Error in readLines(con) : HTTP error 400.

Issue - State: closed - Opened by kdarragh1994 about 2 years ago - 14 comments

#23 - Error when importing external blast results

Issue - State: open - Opened by fka21 almost 3 years ago

#23 - Error when importing external blast results

Issue - State: open - Opened by fka21 almost 3 years ago

#22 - strata_blast issue, similar to #15

Issue - State: open - Opened by GavinLu42 almost 3 years ago

#22 - strata_blast issue, similar to #15

Issue - State: open - Opened by GavinLu42 almost 3 years ago

#21 - Duplicated factor levels while calling stratify()

Issue - State: open - Opened by fka21 almost 4 years ago

#21 - Duplicated factor levels while calling stratify()

Issue - State: open - Opened by fka21 almost 4 years ago

#20 - No alias or index file found

Issue - State: open - Opened by paolacornejo about 4 years ago

#20 - No alias or index file found

Issue - State: open - Opened by paolacornejo about 4 years ago

#19 - Error: 'classification' is not an exported object from 'namespace:taxizedb'

Issue - State: closed - Opened by paolacornejo about 4 years ago - 1 comment

#19 - Error: 'classification' is not an exported object from 'namespace:taxizedb'

Issue - State: closed - Opened by paolacornejo about 4 years ago - 1 comment

#18 - qseqid problem

Issue - State: closed - Opened by CWYuan08 about 4 years ago - 8 comments

#18 - qseqid problem

Issue - State: closed - Opened by CWYuan08 about 4 years ago - 8 comments

#17 - BLAST Database error

Issue - State: open - Opened by maxnest about 4 years ago - 3 comments

#17 - BLAST Database error

Issue - State: open - Opened by maxnest about 4 years ago - 3 comments

#16 - [Question]NCBI nr database VS uniprot

Issue - State: closed - Opened by haojingshao over 4 years ago - 1 comment

#16 - [Question]NCBI nr database VS uniprot

Issue - State: closed - Opened by haojingshao over 4 years ago - 1 comment

#15 - strata_blast issue

Issue - State: closed - Opened by CWYuan08 over 4 years ago - 18 comments

#15 - strata_blast issue

Issue - State: closed - Opened by CWYuan08 over 4 years ago - 18 comments

#14 - Empty faa file for 1008392 produces error with diamond

Issue - State: closed - Opened by urmi-21 over 4 years ago - 2 comments

#14 - Empty faa file for 1008392 produces error with diamond

Issue - State: closed - Opened by urmi-21 over 4 years ago - 2 comments

#13 - Add support for diamond

Pull Request - State: closed - Opened by urmi-21 over 4 years ago - 4 comments

#13 - Add support for diamond

Pull Request - State: closed - Opened by urmi-21 over 4 years ago - 4 comments

#12 - Issues in compiling results

Issue - State: open - Opened by priyanka8590 about 5 years ago

#12 - Issues in compiling results

Issue - State: open - Opened by priyanka8590 about 5 years ago

#11 - Issue in compiling phylostratr results

Issue - State: closed - Opened by priyanka8590 about 5 years ago - 2 comments

#11 - Issue in compiling phylostratr results

Issue - State: closed - Opened by priyanka8590 about 5 years ago - 2 comments

#10 - Invalid Strata object

Issue - State: open - Opened by champ52018 about 5 years ago - 8 comments

#10 - Invalid Strata object

Issue - State: open - Opened by champ52018 about 5 years ago - 8 comments

#9 - swap `BiocInstaller` with `BiocManager`

Issue - State: closed - Opened by aseetharam over 5 years ago - 8 comments

#9 - swap `BiocInstaller` with `BiocManager`

Issue - State: closed - Opened by aseetharam over 5 years ago - 8 comments

#8 - Heatmap layout

Issue - State: open - Opened by Piergiorge over 5 years ago - 8 comments
Labels: bug

#7 - Error (?) - strata_besthits

Issue - State: closed - Opened by Piergiorge almost 6 years ago - 2 comments

#7 - Error (?) - strata_besthits

Issue - State: closed - Opened by Piergiorge almost 6 years ago - 2 comments

#6 - Cannot resolve tree ids in `merge_besthits`

Issue - State: closed - Opened by palfalvi almost 6 years ago - 15 comments
Labels: bug

#5 - How much local storage does it normally take?

Issue - State: closed - Opened by yenagra about 6 years ago - 2 comments

#3 - Update strata.R

Pull Request - State: closed - Opened by lijing28101 over 6 years ago - 2 comments

#1 - Let phylostratr read blast outputs directly!

Issue - State: closed - Opened by urmi-21 over 6 years ago - 5 comments
Labels: enhancement