arbor-sim/arbor issues and pull requests

#2132 - ASCII rendering segment trees

Issue - State: closed - Opened by thorstenhater over 1 year ago
Labels: enhancement, help wanted, Feature Request, neuroscience

#2130 - `IExpr` should be applicable to membrane parameters and all mechanisms

Issue - State: closed - Opened by thorstenhater over 1 year ago - 1 comment
Labels: enhancement, AEP, Project: Arborio

#2129 - Inject/decay of diffusing particles does not work with custom mechanism

Issue - State: closed - Opened by jlubo over 1 year ago - 16 comments
Labels: bug

#2128 - [AUTOMATED] Git submodule updates found

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: dependency update

#2122 - Fix incorrect mention of attribute `catalogue` in `single_cell_model`

Pull Request - State: open - Opened by Helveg over 1 year ago - 1 comment

#2121 - Scikit build core

Pull Request - State: closed - Opened by brenthuisman over 1 year ago - 4 comments

#2120 - Scikit build core

Pull Request - State: closed - Opened by brenthuisman over 1 year ago

#2119 - Doc updates

Pull Request - State: open - Opened by brenthuisman over 1 year ago

#2118 - Workaround for failing MacOS wheel build

Pull Request - State: closed - Opened by brenthuisman over 1 year ago

#2117 - 🔍 Add clang-tidy.

Pull Request - State: closed - Opened by thorstenhater over 1 year ago - 2 comments

#2116 - [AUTOMATED] Git submodule updates found

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: dependency update

#2115 - Fix crash in FindId Visitor.

Pull Request - State: closed - Opened by thorstenhater over 1 year ago

#2114 - NMODL parsing issue with `WHITE_NOISE` block (segmentation fault when compiling)

Issue - State: closed - Opened by jlubo over 1 year ago - 1 comment
Labels: bug

#2113 - mention Matrix, GUI, Playground in docs

Pull Request - State: closed - Opened by brenthuisman over 1 year ago

#2112 - Fix crash on probing non-existent mechanism state.

Pull Request - State: closed - Opened by thorstenhater over 1 year ago

#2111 - Python/pip strikes again: execute `pip install` in venvs

Pull Request - State: closed - Opened by brenthuisman over 1 year ago - 1 comment
Labels: broke the build

#2110 - CV area exposed to NMODL.

Pull Request - State: open - Opened by thorstenhater over 1 year ago

#2109 - `pip install arbor_src_dir` pollutes `venv`s.

Issue - State: closed - Opened by brenthuisman over 1 year ago - 1 comment
Labels: bug

#2108 - Add faster merge events.

Pull Request - State: closed - Opened by thorstenhater over 1 year ago

#2107 - Add zero'ing

Pull Request - State: closed - Opened by thorstenhater over 1 year ago

#2106 - Add LTO and M1 arch to CMake

Pull Request - State: closed - Opened by thorstenhater over 1 year ago - 1 comment

#2105 - Accessing CV area in mechanisms

Issue - State: open - Opened by jlubo over 1 year ago - 1 comment
Labels: Feature Request

#2104 - bugfix: sve code generation

Pull Request - State: closed - Opened by boeschf over 1 year ago

#2103 - [AUTOMATED] Git submodule updates found

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: dependency update

#2102 - 📊 Many small optimizations around event handling.

Pull Request - State: closed - Opened by thorstenhater over 1 year ago - 5 comments

#2101 - Issues when building for SVE

Issue - State: closed - Opened by adegomme over 1 year ago - 6 comments
Labels: bug

#2100 - Busyring example

Pull Request - State: closed - Opened by boeschf over 1 year ago

#2099 - Consider use of Polymorphic Memory Resources for memory management.

Issue - State: open - Opened by thorstenhater over 1 year ago
Labels: enhancement, AEP

#2098 - Enable Spack tests

Pull Request - State: closed - Opened by brenthuisman over 1 year ago

#2097 - The Initialisation Optimisation

Pull Request - State: closed - Opened by thorstenhater over 1 year ago - 3 comments

#2096 - BUGFIX: add missing functions to sve backend

Pull Request - State: closed - Opened by boeschf over 1 year ago

#2095 - BUGFIX: gpu mechanism init

Pull Request - State: closed - Opened by boeschf over 1 year ago - 1 comment

#2094 - 📊 Pin threads

Pull Request - State: closed - Opened by thorstenhater over 1 year ago - 2 comments

#2093 - Take less locks for shorter times when sampling.

Pull Request - State: closed - Opened by thorstenhater over 1 year ago

#2092 - [AUTOMATED] Git submodule updates found

Issue - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: dependency update

#2091 - Fix LIF oversampling.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago

#2090 - Async host to device copy

Issue - State: closed - Opened by boeschf almost 2 years ago
Labels: optimization, gpu

#2089 - Simultion progress bar doesn't update if there are no spikes in the network

Issue - State: closed - Opened by llandsmeer almost 2 years ago - 5 comments
Labels: bug, wontfix

#2088 - Merge GUI tutorial

Pull Request - State: closed - Opened by brenthuisman almost 2 years ago - 1 comment

#2087 - BUGFIX gpu ppack declarations

Pull Request - State: closed - Opened by boeschf almost 2 years ago

#2086 - Silence flake8 and appease black.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago

#2085 - [AUTOMATED] Git submodule updates found

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: dependency update

#2084 - Units and behavior of diffusive particles

Issue - State: open - Opened by jlubo almost 2 years ago - 20 comments
Labels: documentation, clarification needed

#2083 - Exact sampling leads to wrong simulation result

Issue - State: closed - Opened by schmitts almost 2 years ago - 14 comments
Labels: bug

#2082 - 🧹 Re-factor FVM lowered cell implementation and shared state

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago - 3 comments

#2081 - Checkpoint/Resume

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago - 9 comments
Labels: enhancement, arbor IO

#2080 - Add some missing #include directives

Pull Request - State: closed - Opened by musicinmybrain almost 2 years ago - 2 comments

#2079 - Remove redundant sample events structure.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago
Labels: code quality

#2078 - 📊 Make profiler output a bit nicer.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago

#2077 - BUG: typo in `arbor/package.py`: incorrect version.

Pull Request - State: closed - Opened by brenthuisman almost 2 years ago
Labels: bug

#2076 - [AUTOMATED] Git submodule updates found

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: dependency update

#2075 - Tests fail to build: unable to find library -lext-gtest

Issue - State: closed - Opened by yurivict almost 2 years ago - 5 comments
Labels: bug

#2074 - v0.8.1 postrelease

Pull Request - State: closed - Opened by brenthuisman almost 2 years ago

#2073 - Silence spurious unused variable warnings in generated code

Pull Request - State: closed - Opened by bcumming almost 2 years ago

#2072 - v0.8.1

Pull Request - State: closed - Opened by brenthuisman almost 2 years ago

#2071 - Emit better warning.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago

#2070 - Catch ^C in run()

Pull Request - State: closed - Opened by llandsmeer almost 2 years ago - 8 comments

#2069 - CI fixes for wheel building, prep for musllinux, Spack

Pull Request - State: closed - Opened by brenthuisman almost 2 years ago
Labels: broke the build

#2068 - Pressing Ctrl-C during Arbor simulation in a Python process will not stop the process

Issue - State: closed - Opened by llandsmeer almost 2 years ago - 4 comments
Labels: bug

#2067 - 🐙 Optimise PPACK

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago - 5 comments

#2066 - Arbor crashes on GPU if a mechanism is probed that is not placed

Issue - State: closed - Opened by schmitts almost 2 years ago - 1 comment
Labels: bug

#2065 - Allow __ in profiler names.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago - 1 comment

#2064 - Fix docs about exprelr.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago

#2063 - Merge a-b-c into modcc

Issue - State: open - Opened by llandsmeer almost 2 years ago - 1 comment
Labels: enhancement, modcc, AEP

#2062 - GitHub action to build an arbor wheel for pyodide and emscripten

Pull Request - State: closed - Opened by llandsmeer almost 2 years ago - 1 comment

#2061 - Better handling of powers in modcc.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago - 6 comments

#2060 - Build fails on armv7 w/out a clear error message

Issue - State: closed - Opened by yurivict almost 2 years ago - 7 comments
Labels: bug

#2059 - result of comparison of constant -1 with expression of type 'char' is always false

Issue - State: closed - Opened by yurivict almost 2 years ago - 4 comments
Labels: bug

#2058 - Set Python to known version for all CI workflows

Pull Request - State: closed - Opened by brenthuisman almost 2 years ago - 2 comments
Labels: broke the build

#2057 - consistent mechanism ids

Pull Request - State: closed - Opened by boeschf almost 2 years ago - 2 comments

#2056 - Issues with using a custom catalogue on GPU

Issue - State: closed - Opened by schmitts almost 2 years ago - 4 comments
Labels: bug, cannot-reproduce

#2055 - [AUTOMATED] Git submodule updates found

Issue - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: dependency update

#2054 - Check mech

Pull Request - State: closed - Opened by boeschf almost 2 years ago

#2053 - FEATURE: fixed dt

Pull Request - State: closed - Opened by boeschf almost 2 years ago

#2052 - ANN activation functions for NMODL: `sigmoid(x)`, `relu(x)` and `tanh(x)`

Pull Request - State: closed - Opened by llandsmeer almost 2 years ago - 9 comments

#2051 - [BUGFIX] a-b-c: actually set compiler, improved default

Pull Request - State: closed - Opened by brenthuisman almost 2 years ago

#2050 - Feature: High-level network specification

Pull Request - State: closed - Opened by AdhocMan almost 2 years ago - 29 comments

#2049 - Hammer down submodules.

Pull Request - State: closed - Opened by thorstenhater almost 2 years ago - 1 comment

#2048 - Use pugixml instead of libxml2

Pull Request - State: closed - Opened by thorstenhater about 2 years ago - 5 comments

#2045 - BluePyOpt API updates

Pull Request - State: closed - Opened by lukasgd about 2 years ago

#2044 - Sde Tutorial

Pull Request - State: closed - Opened by boeschf about 2 years ago

#2038 - Update ballot -> ballot_sync in reduce_by_key.

Pull Request - State: closed - Opened by thorstenhater about 2 years ago - 4 comments

#2037 - Yank v0.5 from Spack file, it does not build due to change in setting arch

Pull Request - State: closed - Opened by brenthuisman about 2 years ago

#2032 - Reconsider fixed gpu spike buffer size

Issue - State: closed - Opened by schmitts about 2 years ago - 3 comments
Labels: bug

#2030 - SDE examples

Pull Request - State: closed - Opened by boeschf about 2 years ago - 5 comments

#2029 - make ARB_MODCC functional again

Pull Request - State: closed - Opened by brenthuisman about 2 years ago - 1 comment

#2027 - User defined synaptic kernels for LIF cells

Issue - State: closed - Opened by schmitts about 2 years ago - 4 comments
Labels: enhancement, help wanted, Feature Request, neuroscience

#2015 - Further analysis of Arbor vs. Neuron discrepancy for BBP mechanisms (K_Tst and K_Pst)

Issue - State: open - Opened by lukasgd about 2 years ago - 1 comment

#2010 - Build on emscripten

Issue - State: closed - Opened by llandsmeer about 2 years ago - 3 comments
Labels: Feature Request

#2010 - Build on emscripten

Issue - State: closed - Opened by llandsmeer about 2 years ago - 3 comments
Labels: Feature Request

#2005 - Optimise Memory Consumption during Setup

Pull Request - State: closed - Opened by thorstenhater about 2 years ago - 4 comments

#2001 - Feature: External Connectivity

Pull Request - State: closed - Opened by thorstenhater about 2 years ago - 2 comments

#1998 - More neuroscience: a showcase of some neuroscience.

Issue - State: closed - Opened by brenthuisman about 2 years ago - 1 comment
Labels: enhancement, Feature Request, neuroscience

#1997 - Computing time (for network with synapses) scales unexpectedly with timestep and simulation time

Issue - State: open - Opened by jlubo about 2 years ago - 5 comments
Labels: help wanted, optimization, clarification needed

#1991 - :atom: Meson

Pull Request - State: open - Opened by thorstenhater about 2 years ago - 2 comments

#1990 - Add NO_DEFAULT_PATH to find_program (modcc)

Pull Request - State: closed - Opened by llandsmeer about 2 years ago - 30 comments

#1983 - Units! At least on the Python API surface

Issue - State: closed - Opened by thorstenhater about 2 years ago - 5 comments
Labels: enhancement, python, interface, AEP

#1981 - Clean-up Morphology Loaders

Issue - State: closed - Opened by thorstenhater about 2 years ago
Labels: help wanted, code quality, arbor IO, good 1st issue, interface, Feature Request

#1980 - Remove deprecated `spike_detector` in Python entirely.

Issue - State: closed - Opened by thorstenhater about 2 years ago
Labels: interface

#1979 - Python/concurrency defaults

Pull Request - State: closed - Opened by brenthuisman about 2 years ago - 12 comments

GitHub / arbor-sim/arbor issues and pull requests