Ecosyste.ms: Issues

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GitHub / aramis-lab/pydra-fsl issues and pull requests

#76 - Bump actions/configure-pages from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#75 - Bump actions/upload-pages-artifact from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#74 - Bump actions/deploy-pages from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#73 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#72 - Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#71 - Bump actions/configure-pages from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#70 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#69 - Bump actions/deploy-pages from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#68 - add threshold to fsl maths

Pull Request - State: closed - Opened by NicolasGensollen about 1 year ago - 2 comments

#67 - [FIX] Fix input specs for eddy

Pull Request - State: closed - Opened by NicolasGensollen about 1 year ago

#66 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#65 - [FIX] Make `Eddy` `fieldmap_image` optional

Pull Request - State: closed - Opened by NicolasGensollen about 1 year ago

#64 - [FIX] Add missing decorator to `Eddy` output specs

Pull Request - State: closed - Opened by NicolasGensollen about 1 year ago

#63 - Bump actions/upload-pages-artifact from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#62 - ENH: Use explicit name for image type argument in FAST

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#61 - CI: Drop testing on Python 3.7

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#60 - ENH: Drop FSL prefix from maths

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#59 - ENH: Drop FSL prefix from prepare_fieldmap

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#58 - ENH: Drop FSL prefix from utils

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#57 - ENH: Add input and reference weights for FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#56 - DOC: Publish official documentation

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#55 - NEW: Add task definitions for topup and applytopup

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#54 - NEW: Add task definition for fslorient

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#53 - NEW: Add task definition for fslcpgeom

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#52 - NEW: Add task definition for fsl_prepare_fieldmap

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#51 - REF: Move all convert_xfm based utils to same module

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#50 - REF: Move ApplyXFM to flirt module

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#49 - NEW: Add task definition for prelude

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#48 - NEW: Add task definition for sigloss

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#47 - Official documentation

Issue - State: closed - Opened by ghisvail over 1 year ago

#46 - Naming convention

Issue - State: closed - Opened by ghisvail over 1 year ago

#45 - NEW: Add task definition for fslsmoothfill

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#44 - NEW: Add task definition for fslselectvols

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#43 - NEW: Add task definition for fslinterleave

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#42 - NEW: Add task definition for FSLFFT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#41 - MNT: Move to src layout

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#40 - NEW: Add fsl.utils.FSLChFileType

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#39 - NEW: Add fsl.utils.FSLSwapDim

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#38 - NEW: Add task definition for fnirtfileutils

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#37 - NEW: Add task definition for fslslice

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#36 - NEW: Add task definition for fslsplit

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#35 - NEW: Add task definition for FSLInfo

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#34 - NEW: Add task definition for fugue

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#33 - NEW: Add task definitions for deformation utilities

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#32 - NEW: Add tasks for coordinates transformation

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#31 - NEW: Add task definition for SUSAN

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#30 - ENH: Add specifications for BET variations

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#29 - REF: Move BET interfaces and utils to own subpackage

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#28 - ENH: Add weighting image spec for FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#27 - ENH: Add search specifications for FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#26 - NEW: Add convenience interfaces for some FLIRT utils

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#25 - Add ApplyXFM, ConcatXFM and InvertXFM conveniance interfaces

Issue - State: closed - Opened by ghisvail over 1 year ago - 1 comment
Labels: enhancement

#24 - NEW: Add task definition for fslmaths' mul

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#23 - FIX: Move callables out of FAST output spec

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#22 - FIX: Add missing attrs.define to FAST output spec

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#21 - FIX: Use pydra.specs.File in BET output spec

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#20 - FIX: Move verbose and save flags for Eddy

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#19 - FIX: Use lists for requires metadata in ShellOutSpec

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#18 - FIX: Make BETSpec derive ShellSpec

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#17 - REF: Normalize modules layout

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#16 - FIX: Make BET derive from ShellCommandTask

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#15 - ENH: Add interpolation parameter for FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#14 - ENH: Add more parameters to FNIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#13 - ENH: Add verbose parameter to main interfaces

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#12 - ENH: Set default output files for FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#11 - FIX: Make dof and 2D registration parameters mutually exclusive

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#10 - ENH: Add verbose logging for FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#9 - ENH: Add cost function parameter to FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#8 - ENH: Add output_datatype parameter to FLIRT

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#7 - NEW: Add task definition for fslroi

Pull Request - State: closed - Opened by ghisvail over 1 year ago - 1 comment

#6 - NEW: Add task definition for robustfov

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#5 - NEW: Add task definition for fslreorient2std

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#4 - NEW: Add task definition for FAST

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#3 - NEW: Add task definition for convert_xfm

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#2 - NEW: Add task definition for eddy

Pull Request - State: closed - Opened by ghisvail over 1 year ago - 3 comments

#1 - CI: Add workflow to test the codebase

Pull Request - State: closed - Opened by ghisvail almost 2 years ago