Ecosyste.ms: Issues

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GitHub / aramis-lab/pydra-bids issues and pull requests

#69 - Bump actions/configure-pages from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#68 - Bump actions/deploy-pages from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#67 - Bump actions/upload-pages-artifact from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies

#66 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#65 - Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#64 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#63 - Bump actions/configure-pages from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#62 - Bump actions/deploy-pages from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies

#61 - FIX: Convert Black's extend-exclude to a string

Pull Request - State: closed - Opened by ghisvail about 1 year ago

#60 - Bump actions/checkout from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#59 - Bump actions/upload-pages-artifact from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#58 - Bump actions/deploy-pages from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#57 - REF: Use task generator pattern

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#56 - FIX: Replace BIDS layout class by ancpbids model

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#55 - Bump actions/configure-pages from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#54 - MNT: Migrate to Hatch

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#53 - MNT: Update dependencies

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#52 - DOC: Upgrade sphinx configuration and dependencies

Pull Request - State: closed - Opened by ghisvail over 1 year ago

#51 - Upgrade Pydra to version 0.21

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#50 - FIX: Return None for output entities absent from file path

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#49 - FIX: Return prefix in output entities parsed by BIDSFileInfo

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#48 - FIX: Only provide one specific participant and / or session IDs to BDR

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#47 - FIX: Update input spec of BDR

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#46 - WIP: Add BIDS dataset writer

Pull Request - State: open - Opened by ghisvail almost 2 years ago

#45 - Check for spelling mistakes with codespell

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#44 - Enable query for dataset description only

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#43 - Return dataset description when reading a BIDS dataset

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#42 - Rename BIDSDataReader to BIDSDatasetReader

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#41 - Rename bids_file argument to file_path

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#40 - Upgrade ancpbids to version 0.2.1

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#39 - Flatten results if single query

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#38 - Automate publishing of the package to PyPI

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#37 - Upgrade ancpbids to version 0.2.0

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#36 - Add API documentation

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#35 - Upgrade ancpbids to latest git commit

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#34 - Use output entities to parse subjects and sessions

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#33 - Add support for reading specific subjects and sessions

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#32 - Drop use of dataclasses

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#31 - Upgrade ancpbids to latest git commit

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#30 - Add Python 3.11 to test matrix

Pull Request - State: closed - Opened by ghisvail almost 2 years ago - 1 comment

#29 - Bump pydra from 0.19 to 0.20

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies, python

#28 - Use PyData's sphinx theme for documentation

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#27 - Add workflow to deploy the documentation to GitHub Pages

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#26 - Fix namespace package metadata

Pull Request - State: closed - Opened by ghisvail almost 2 years ago - 1 comment

#25 - Provide default task name

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#24 - Drop use of install stamp

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#23 - Add BIDS file info and data reader tasks

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#22 - Automate updates for GitHub Actions and Poetry

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#21 - Add target to build the package

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#20 - Update make targets and dev instructions

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#19 - Add dist target to build package

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#18 - Add targets for managing locked dependencies

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#17 - Improve clean and docs targets

Pull Request - State: closed - Opened by ghisvail almost 2 years ago

#16 - Use new poetry cache feature in CI

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#15 - Migrate to Poetry version 1.2

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#14 - Update docstrings from reading and parsing tasks

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#13 - Fix imports, docstring and signature of parsing task

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#12 - Rename modules

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#11 - Add tasks for querying subjects and sessions

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#10 - Add subject and session to BIDS reader

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#9 - Use pydra's annotations to make BIDS readers

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#8 - Fix single reader query case

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#7 - Use numpydoc for docstrings

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#6 - Enable task customisation using kwargs

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#5 - Upgrade pydra to version 0.19

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#4 - Initial implementation for BIDS reading task

Pull Request - State: closed - Opened by ghisvail about 2 years ago - 2 comments

#3 - Upgrade CI workflow

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#2 - Upgrade pydra to version 0.19

Pull Request - State: closed - Opened by ghisvail about 2 years ago

#1 - Parse BIDS using ancpbids

Pull Request - State: closed - Opened by ghisvail about 2 years ago