Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / aprilweilab/grgl issues and pull requests

#39 - Reworking GRG file format, version 2 of GRGL

Pull Request - State: open - Opened by dcdehaas 4 days ago

#38 - Use C++-style cast to avoid clang-format issue

Pull Request - State: closed - Opened by dcdehaas 24 days ago

#37 - Fix bug that was producing extra root nodes during MapMutations

Pull Request - State: closed - Opened by dcdehaas 24 days ago

#36 - Dot-product _always_ uses down edges (even in downward direction)

Pull Request - State: closed - Opened by dcdehaas about 2 months ago

#35 - Improve the markdown documentation in this repo

Pull Request - State: closed - Opened by dcdehaas about 2 months ago

#34 - Upgrade to latest version of picovcf

Pull Request - State: closed - Opened by dcdehaas about 2 months ago

#33 - Bump version to 1.03

Pull Request - State: closed - Opened by dcdehaas 3 months ago

#32 - Better support for partial/split GRGs

Pull Request - State: closed - Opened by dcdehaas 3 months ago

#31 - Something to consider: sex chromosomes

Issue - State: open - Opened by AprilWei001 3 months ago - 2 comments

#30 - Update GettingStarted.md

Pull Request - State: closed - Opened by AprilWei001 3 months ago

#29 - Traverse GRG edges from disk

Issue - State: open - Opened by dcdehaas 3 months ago - 1 comment

#28 - Remove reference to out-dated script in README

Pull Request - State: closed - Opened by dcdehaas 3 months ago

#27 - Graph traversal (mostly) from disk, without loading entire graph in memory

Issue - State: closed - Opened by yaacoo 3 months ago - 3 comments

#26 - dot_product: support all-nodes output

Issue - State: open - Opened by dcdehaas 3 months ago - 4 comments

#24 - Bump version to 1.02

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#23 - Add get_mutation_node_pairs API to Python (ordered by mutation)

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#22 - Reorg some markdown content, fix RTD project name

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#21 - Complete packaging support (using manylinux)

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#20 - Modified which() to support executables in workspace

Pull Request - State: open - Opened by landrumb 4 months ago

#19 - Packaging support; first steps towards PyPi

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#18 - Add dot-product API

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#17 - Add short DEVELOPING.md

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#16 - Use ENV instead of pip --install-options

Pull Request - State: closed - Opened by dcdehaas 4 months ago

#15 - updated readme to use newer method of passing flags to pip

Pull Request - State: closed - Opened by landrumb 4 months ago - 1 comment

#14 - Add --maintain-topo and --no-simplify options to grg convert

Pull Request - State: closed - Opened by dcdehaas 5 months ago

#13 - Order mutation IDs, down edges optional, gperf support

Pull Request - State: closed - Opened by dcdehaas 5 months ago

#12 - Add -o / --out-file to `grg construct`

Pull Request - State: closed - Opened by dcdehaas 5 months ago

#11 - Fix the hashing from the previous PR

Pull Request - State: closed - Opened by dcdehaas 5 months ago

#10 - Add the (optional) triplet algorithm for BuildShape

Pull Request - State: closed - Opened by dcdehaas 5 months ago

#9 - Upgrade to new (backwards-compatible) picovcf version

Pull Request - State: closed - Opened by dcdehaas 5 months ago

#8 - Fix a few errors in GettingStarted.md

Pull Request - State: closed - Opened by dcdehaas 6 months ago

#7 - Fix linkage issue with Python-exposed constant

Pull Request - State: closed - Opened by dcdehaas 7 months ago

#6 - Optionally remove empty variants during file conversion

Pull Request - State: closed - Opened by dcdehaas 7 months ago

#5 - Only reconstruct "Up edges" when necessary

Pull Request - State: closed - Opened by dcdehaas 7 months ago

#4 - GWAS calculation

Pull Request - State: closed - Opened by dcdehaas 7 months ago

#3 - Add population support to GRG samples

Pull Request - State: closed - Opened by dcdehaas 7 months ago

#2 - Add sample/mutation subset support for allele frequency

Pull Request - State: closed - Opened by dcdehaas 7 months ago

#1 - Some minor code cleanup

Pull Request - State: closed - Opened by dcdehaas 7 months ago