Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / apriha/snps issues and pull requests

#184 - Enhance VCF output

Pull Request - State: closed - Opened by apriha 3 months ago - 1 comment

#183 - Fix DtypeWarning

Pull Request - State: closed - Opened by apriha 3 months ago - 1 comment

#182 - Parse PLINK

Pull Request - State: closed - Opened by apriha 3 months ago

#181 - Add PLINK test

Pull Request - State: closed - Opened by apriha 3 months ago

#180 - Parse Sano DTC format

Pull Request - State: closed - Opened by apriha 3 months ago - 2 comments

#179 - Fix linting issues

Pull Request - State: closed - Opened by apriha 4 months ago - 1 comment

#178 - Fix OverflowError

Pull Request - State: closed - Opened by apriha 4 months ago

#176 - Add support to detect plink generated 23andme files

Pull Request - State: closed - Opened by teepean 7 months ago - 1 comment

#175 - Lint and format with Ruff

Pull Request - State: closed - Opened by apriha 7 months ago

#174 - Fix GenomePrep resources

Pull Request - State: closed - Opened by apriha 7 months ago

#173 - GenomePrep databases are offline

Issue - State: closed - Opened by ElSaico 7 months ago - 1 comment

#172 - CI updates

Pull Request - State: closed - Opened by apriha 9 months ago - 1 comment

#171 - Update ezancestry, works local

Pull Request - State: closed - Opened by arvkevi 9 months ago - 3 comments

#170 - Support modern Python versions

Pull Request - State: closed - Opened by apriha 10 months ago - 1 comment

#169 - Fix CI issues

Pull Request - State: closed - Opened by apriha 10 months ago - 1 comment

#168 - v2.7.2

Pull Request - State: closed - Opened by apriha over 1 year ago - 1 comment

#167 - v2.7.1

Pull Request - State: closed - Opened by apriha almost 2 years ago - 1 comment

#166 - Bump certifi from 2022.5.18.1 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments
Labels: dependencies

#165 - from Developed to Master VCF check and Myheritage fix

Pull Request - State: closed - Opened by adrianodemarino almost 2 years ago

#164 - Bump pillow from 9.1.1 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#163 - v2.7.0

Pull Request - State: closed - Opened by apriha about 2 years ago - 1 comment

#162 - Sano updates

Pull Request - State: closed - Opened by apriha about 2 years ago - 1 comment

#161 - v2.6.0

Pull Request - State: closed - Opened by apriha over 2 years ago - 1 comment

#160 - Sano updates

Pull Request - State: closed - Opened by apriha over 2 years ago - 1 comment

#159 - parse only a specific region (or chromosome)

Issue - State: open - Opened by IsmailM over 2 years ago

#158 - VCF parsing issue with ezancestry

Issue - State: open - Opened by apriha over 2 years ago

#157 - v2.5.0

Pull Request - State: closed - Opened by apriha over 2 years ago - 1 comment

#156 - v2.4.4

Pull Request - State: closed - Opened by apriha over 2 years ago - 1 comment

#155 - Titorat patch 1

Pull Request - State: closed - Opened by Titorat over 2 years ago - 1 comment

#154 - Bump pillow from 9.1.0 to 9.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#153 - v2.4.3

Pull Request - State: closed - Opened by apriha over 2 years ago - 1 comment

#152 - Bump pillow from 9.0.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#151 - v2.4.2

Pull Request - State: closed - Opened by apriha almost 3 years ago - 1 comment

#150 - Bump pillow from 8.4.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#149 - v2.4.1

Pull Request - State: closed - Opened by apriha about 3 years ago - 1 comment

#148 - v2.4.0

Pull Request - State: closed - Opened by apriha about 3 years ago - 1 comment

#147 - Support current version of `black`

Pull Request - State: closed - Opened by apriha about 3 years ago - 1 comment

#146 - Identify and filter low quality SNPs

Issue - State: closed - Opened by apriha about 3 years ago - 1 comment
Labels: enhancement, help wanted

#145 - Identify SNP array cluster

Issue - State: closed - Opened by apriha about 3 years ago - 1 comment
Labels: enhancement, help wanted

#144 - Support latest version of black

Issue - State: closed - Opened by apriha about 3 years ago

#143 - Basic ancestry functionality

Pull Request - State: closed - Opened by arvkevi about 3 years ago - 13 comments

#142 - Bump pillow from 8.2.0 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#141 - v2.3.0

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#140 - Drop support for Python 3.6

Issue - State: closed - Opened by apriha over 3 years ago

#139 - Add binary output buffer support

Pull Request - State: closed - Opened by insolite over 3 years ago - 3 comments

#138 - v2.2.0

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#137 - Sano updates

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#136 - Fix 23andme missing chromosome and/or position

Pull Request - State: closed - Opened by afaulconbridge over 3 years ago

#135 - v2.1.4

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#134 - Bump pillow from 8.1.2 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#133 - more specific tellmegen detection

Pull Request - State: closed - Opened by afaulconbridge over 3 years ago - 1 comment

#132 - Bump urllib3 from 1.26.4 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#131 - return recursive result

Pull Request - State: closed - Opened by afaulconbridge over 3 years ago - 1 comment

#130 - Getting "404: Not Found" when trying to use get_opensnp_datadump_filenames()

Issue - State: closed - Opened by mkbond777 over 3 years ago - 2 comments

#129 - Refactor I/O classes

Pull Request - State: open - Opened by apriha over 3 years ago - 2 comments

#128 - v2.1.3

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#127 - added parallelizer in '_write_vcf' Writer method

Pull Request - State: closed - Opened by gabrielmotaa over 3 years ago

#126 - v2.1.2

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#125 - Setup GitHub actions

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#124 - Bump jinja2 from 2.11.2 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#123 - Bump pillow from 7.2.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#122 - Change "generic" source to "unknown"

Issue - State: open - Opened by apriha almost 4 years ago

#121 - v2.1.1

Pull Request - State: closed - Opened by apriha almost 4 years ago

#120 - AttributeError: 'str' object has no attribute '_output_dir'

Issue - State: open - Opened by lakishadavid almost 4 years ago - 9 comments

#119 - Class based source readers?

Issue - State: open - Opened by afaulconbridge almost 4 years ago - 1 comment

#118 - improve vcf handling

Pull Request - State: closed - Opened by afaulconbridge almost 4 years ago - 1 comment

#117 - openSNPs downloads

Issue - State: closed - Opened by afaulconbridge about 4 years ago - 3 comments

#116 - remove singleton metaclass

Pull Request - State: open - Opened by afaulconbridge about 4 years ago - 3 comments

#115 - remove unnecessary __call__ functions for clarity

Pull Request - State: closed - Opened by afaulconbridge about 4 years ago

#114 - allow sex dedup determination

Pull Request - State: open - Opened by afaulconbridge about 4 years ago - 3 comments

#113 - v2.1.0

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#112 - Consolidate issues into one dataframe

Issue - State: open - Opened by apriha about 4 years ago

#111 - Ancestry multiple spaces

Pull Request - State: closed - Opened by afaulconbridge about 4 years ago - 4 comments

#110 - Use set for rsids

Pull Request - State: closed - Opened by afaulconbridge about 4 years ago

#108 - Optimize normalized snps dataframe dtypes

Issue - State: open - Opened by apriha about 4 years ago - 4 comments

#107 - Deduplicate loci

Issue - State: open - Opened by apriha about 4 years ago

#106 - Add `chrom` parameter to `SNPs.merge`

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#105 - Multisample VCF

Issue - State: open - Opened by kkarbasi about 4 years ago - 1 comment

#104 - v2.0.3

Pull Request - State: closed - Opened by apriha about 4 years ago

#103 - v2.0.2

Pull Request - State: closed - Opened by apriha about 4 years ago

#102 - Merge SNPs for a chromosome

Issue - State: closed - Opened by apriha about 4 years ago
Labels: enhancement

#101 - Adjust string formatting to use fstrings

Pull Request - State: closed - Opened by JulianRunnels about 4 years ago

#100 - Use f-strings for string formatting

Issue - State: closed - Opened by apriha about 4 years ago
Labels: good first issue

#99 - Use temp dir for output files during tests

Issue - State: closed - Opened by apriha about 4 years ago
Labels: enhancement, good first issue

#98 - v2.0.1

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#97 - Support alternate Mapmygenome header

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#96 - v2.0.0

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#95 - mapmygenome filter on GC.Score

Issue - State: open - Opened by satishmp about 4 years ago - 2 comments
Labels: question

#94 - mapmygenome DTC file format has changed.

Issue - State: closed - Opened by satishmp about 4 years ago

#93 - Rename methods and properties

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#92 - Rename `SNPs` methods and properties

Issue - State: closed - Opened by apriha about 4 years ago

#91 - Add `SNPs.merge` method

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#90 - Fix usage of `check_exact`

Pull Request - State: closed - Opened by apriha over 4 years ago - 1 comment

#89 - Usage of `check_exact` raises `AssertionError`

Issue - State: closed - Opened by apriha over 4 years ago

#88 - Add `SNPs.merge` method

Issue - State: closed - Opened by apriha over 4 years ago

#87 - Handle diploid MT genotypes

Pull Request - State: closed - Opened by apriha over 4 years ago - 1 comment

#86 - Feature/sano updates

Pull Request - State: closed - Opened by willgdjones over 4 years ago - 5 comments

#85 - Use tab as default separator

Pull Request - State: closed - Opened by apriha over 4 years ago - 1 comment