Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / apriha/lineage issues and pull requests

#114 - Fix CI issues

Pull Request - State: closed - Opened by apriha 5 months ago - 1 comment

#113 - CI updates

Pull Request - State: closed - Opened by apriha 9 months ago - 1 comment

#112 - Support modern Python versions

Pull Request - State: closed - Opened by apriha 9 months ago - 1 comment

#111 - Fix CI issues

Pull Request - State: closed - Opened by apriha 9 months ago - 1 comment

#110 - Status code: 502 Reason: Bad Gateway

Issue - State: closed - Opened by lakishadavid 10 months ago - 2 comments

#109 - v4.3.1

Pull Request - State: closed - Opened by apriha almost 2 years ago - 1 comment

#107 - Bump certifi from 2022.5.18.1 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments
Labels: dependencies

#106 - Bump pillow from 9.1.1 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#105 - v4.3.0

Pull Request - State: closed - Opened by apriha over 2 years ago - 1 comment

#104 - Bump pillow from 9.0.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#103 - v4.2.0

Pull Request - State: closed - Opened by apriha almost 3 years ago - 1 comment

#102 - v4.1.3

Pull Request - State: closed - Opened by apriha almost 3 years ago - 1 comment

#101 - Bump pillow from 8.2.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#100 - Bump pillow from 8.2.0 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#98 - zlib.error: Error -3 while decompressing data: invalid stored block lengths

Issue - State: open - Opened by yongsuH over 3 years ago - 1 comment

#97 - v4.1.2

Pull Request - State: closed - Opened by apriha over 3 years ago - 1 comment

#96 - Bump pillow from 8.1.2 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#95 - Bump urllib3 from 1.26.4 to 1.26.5

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#94 - v4.1.1

Pull Request - State: closed - Opened by apriha over 3 years ago

#93 - v4.1.0

Pull Request - State: closed - Opened by apriha over 3 years ago

#92 - Support additional genetic maps

Pull Request - State: closed - Opened by apriha over 3 years ago

#91 - Mock downloads

Pull Request - State: closed - Opened by apriha over 3 years ago

#90 - v4.0.1

Pull Request - State: closed - Opened by apriha over 3 years ago

#89 - Setup GitHub actions

Pull Request - State: closed - Opened by apriha over 3 years ago

#88 - Bump jinja2 from 2.11.2 to 2.11.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 3 comments
Labels: dependencies

#87 - Bump urllib3 from 1.26.2 to 1.26.3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 3 comments
Labels: dependencies

#86 - Bump pillow from 8.1.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies

#85 - v4.0.0

Pull Request - State: closed - Opened by apriha almost 4 years ago - 1 comment

#83 - Change license

Pull Request - State: closed - Opened by apriha almost 4 years ago

#82 - v3.1.5

Pull Request - State: closed - Opened by apriha about 4 years ago - 1 comment

#81 - Save output files on custom location

Issue - State: closed - Opened by biholaindrasinh about 4 years ago - 1 comment

#80 - v3.1.3

Pull Request - State: closed - Opened by apriha over 4 years ago - 1 comment

#79 - Fix `snps` resources import

Pull Request - State: closed - Opened by apriha over 4 years ago - 1 comment

#76 - Fix Travis CI build script

Pull Request - State: closed - Opened by apriha almost 5 years ago

#74 - Derive Y-STRs from Big Y data

Issue - State: open - Opened by apriha about 7 years ago
Labels: enhancement

#73 - Add additional location information

Issue - State: open - Opened by apriha almost 6 years ago
Labels: enhancement

#72 - v3.1.0

Pull Request - State: closed - Opened by apriha about 5 years ago - 1 comment

#71 - Use logging instead of print statements

Issue - State: closed - Opened by apriha over 5 years ago - 2 comments

#70 - Document algorithms

Issue - State: closed - Opened by apriha over 5 years ago - 1 comment

#69 - Absence of Y chromosome match between confirmed father and son

Issue - State: closed - Opened by damblef over 5 years ago - 1 comment

#68 - v3.0.1

Pull Request - State: closed - Opened by apriha over 5 years ago - 1 comment

#67 - v3.0.0

Pull Request - State: closed - Opened by apriha over 5 years ago

#66 - support for reading vcf

Pull Request - State: closed - Opened by arvkevi over 5 years ago - 2 comments

#65 - Report on allele information at any given SNP.

Issue - State: closed - Opened by ebacherdom over 5 years ago - 2 comments

#64 - Ability to reassemble Kit from specified fragments of other kits.

Issue - State: closed - Opened by ebacherdom over 5 years ago - 1 comment

#63 - For an arbitrary group of individuals, show the pattern at a given loci

Issue - State: closed - Opened by ebacherdom over 5 years ago - 1 comment

#62 - v2.0.0

Pull Request - State: closed - Opened by apriha over 5 years ago - 1 comment

#61 - v1.1.1

Pull Request - State: closed - Opened by apriha over 5 years ago - 2 comments

#60 - Add black (#55)

Pull Request - State: closed - Opened by abitrolly over 5 years ago - 4 comments

#59 - v1.1.0

Pull Request - State: closed - Opened by apriha over 5 years ago - 1 comment

#58 - Add support for new filetypes

Issue - State: closed - Opened by apriha over 5 years ago - 3 comments

#57 - Improve saving of output files

Pull Request - State: closed - Opened by apriha almost 6 years ago - 1 comment

#56 - Add `SNPs` helper methods

Pull Request - State: closed - Opened by apriha almost 6 years ago - 1 comment

#55 - Integrate automated code analysis

Issue - State: closed - Opened by apriha almost 6 years ago - 3 comments

#54 - Enhance documentation for installation

Issue - State: closed - Opened by apriha almost 6 years ago

#53 - Support minimum versions of dependencies

Issue - State: closed - Opened by apriha almost 6 years ago - 1 comment

#52 - Update pandas indexing

Issue - State: closed - Opened by apriha almost 6 years ago - 1 comment

#51 - Improve file handling

Pull Request - State: closed - Opened by apriha almost 6 years ago - 1 comment

#49 - Use Matplotlib `Agg` backend

Pull Request - State: closed - Opened by apriha almost 6 years ago - 1 comment

#46 - Try HTTP version of URL if an FTP error occurred

Pull Request - State: closed - Opened by apriha almost 6 years ago - 1 comment

#45 - Productize for v1.0; fixes #41

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#44 - Return discrepant SNPs; fixes #42

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#43 - Assign PAR SNPs to X and Y chromosomes

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#42 - Return discrepant SNPs

Issue - State: closed - Opened by apriha over 6 years ago

#41 - Productize for v1.0 release

Issue - State: closed - Opened by apriha over 6 years ago - 4 comments

#40 - Remove chromosomes that are not remapped for consistency; fixes #24

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#39 - Update determination of sex; fixes #27

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#38 - Incorporate HapMap PAR regions; fixes #26

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#37 - Pin requirements and test Python 3.7

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#36 - Cache assembly mapping data; fixes #28

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#35 - Add summary info; fixes #34

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#34 - Add summary info

Issue - State: closed - Opened by apriha over 6 years ago

#33 - Integrate Read the Docs; fixes #25

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#32 - Add support for VCF

Issue - State: closed - Opened by apriha over 6 years ago - 2 comments
Labels: enhancement

#31 - Add tests; fixes #1

Pull Request - State: closed - Opened by apriha over 6 years ago - 1 comment

#30 - Better handle discordant SNPs inherited from mother / father

Issue - State: closed - Opened by apriha over 6 years ago - 1 comment

#29 - Perform additional analysis for genes / shared genes

Issue - State: open - Opened by apriha over 6 years ago
Labels: enhancement

#28 - Cache assembly mapping data

Issue - State: closed - Opened by apriha over 6 years ago
Labels: enhancement

#27 - Update determination of sex

Issue - State: closed - Opened by apriha over 6 years ago

#26 - Improve support for PAR / X chromosome

Issue - State: closed - Opened by apriha over 6 years ago - 4 comments

#25 - Integrate Read the Docs for building / hosting documentation

Issue - State: closed - Opened by apriha over 6 years ago

#24 - Handle case when a chromosome cannot be remapped

Issue - State: closed - Opened by apriha over 6 years ago

#23 - Support additional genetic maps

Issue - State: closed - Opened by apriha over 6 years ago
Labels: enhancement

#22 - Add plotting capabilities

Issue - State: open - Opened by apriha over 6 years ago
Labels: enhancement

#21 - Add admixture analysis capabilities

Issue - State: closed - Opened by apriha over 6 years ago - 1 comment
Labels: enhancement

#20 - Add ability to create groups of arbitrary individuals

Issue - State: closed - Opened by apriha over 6 years ago - 1 comment
Labels: enhancement

#19 - Use Build 37 for processing; fixes #13

Pull Request - State: closed - Opened by apriha almost 7 years ago

#18 - Automatically detect assembly of file being loaded; fixes #3

Pull Request - State: closed - Opened by apriha almost 7 years ago

#17 - Update SNP sorting to use a CategoricalDtype; fixes #16

Pull Request - State: closed - Opened by apriha almost 7 years ago

#16 - Update SNP sorting to use a CategoricalDtype

Issue - State: closed - Opened by apriha almost 7 years ago

#15 - Find shared DNA between an arbitrary number of individuals

Issue - State: closed - Opened by apriha almost 7 years ago - 1 comment
Labels: enhancement

#14 - Track and use discrepant SNPs to improve quality of data

Issue - State: closed - Opened by apriha about 7 years ago - 2 comments
Labels: enhancement

#13 - Remove support for Build 36

Issue - State: closed - Opened by apriha about 7 years ago

#11 - Develop a web front-end

Issue - State: closed - Opened by apriha about 7 years ago - 2 comments
Labels: enhancement

#6 - Speed-up re-mapping with the asyncio module

Issue - State: closed - Opened by apriha about 7 years ago - 1 comment
Labels: enhancement

#5 - Speed-up processing with the multiprocessing module

Issue - State: closed - Opened by apriha about 7 years ago - 1 comment
Labels: enhancement

#4 - Save results in memory as they are computed

Issue - State: closed - Opened by apriha about 7 years ago - 1 comment
Labels: enhancement

#3 - Automatically detect assembly of file being loaded

Issue - State: closed - Opened by apriha about 7 years ago
Labels: enhancement