apptainer/singularity issues and pull requests

#6518 - Problem with intra-node communication

Issue - State: closed - Opened by mredenti about 1 month ago - 1 comment

#6517 - bind external path in singularity run

Issue - State: closed - Opened by Overcraft90 3 months ago - 1 comment

#6516 - How to change .sif image mounting from FUSE to Linux kernel

Issue - State: closed - Opened by Jake-Leese 6 months ago - 1 comment

#6515 - .

Issue - State: closed - Opened by vsarsani 7 months ago - 1 comment

#6514 - how to see the images have been downloaded

Issue - State: closed - Opened by Toomshots 8 months ago - 1 comment

#6513 - delete sandbox

Issue - State: closed - Opened by jammywwh 9 months ago - 1 comment

#6513 - delete sandbox

Issue - State: closed - Opened by jammywwh 9 months ago - 1 comment

#6512 - Unknown image format/type

Issue - State: closed - Opened by RosaDeSa 9 months ago - 1 comment

#6512 - Unknown image format/type

Issue - State: closed - Opened by RosaDeSa 9 months ago - 1 comment

#6511 - Unknown image format/type

Issue - State: closed - Opened by RosaDeSa 9 months ago - 1 comment

#6511 - Unknown image format/type

Issue - State: closed - Opened by RosaDeSa 9 months ago - 1 comment

#6510 - Couldn't always determine user account information in slurm

Issue - State: closed - Opened by laurapoggio-sptools 10 months ago - 1 comment

#6510 - Couldn't always determine user account information in slurm

Issue - State: closed - Opened by laurapoggio-sptools 10 months ago - 1 comment

#6509 - apply_privileges Requesting capability set while permitted capability set is

Issue - State: closed - Opened by josemq 10 months ago - 1 comment

#6509 - apply_privileges Requesting capability set while permitted capability set is

Issue - State: closed - Opened by josemq 10 months ago - 1 comment

#6508 - singularity-3.8.7/scripts/go-generate: Permission denied

Issue - State: closed - Opened by karthickbrlab 11 months ago - 1 comment

#6508 - singularity-3.8.7/scripts/go-generate: Permission denied

Issue - State: closed - Opened by karthickbrlab 11 months ago - 1 comment

#6507 - ERROR : Failed invoking the NEWUSER namespace runtime: Invalid argument ABORT : Retval = 255

Issue - State: closed - Opened by DrrDom 11 months ago - 1 comment

#6507 - ERROR : Failed invoking the NEWUSER namespace runtime: Invalid argument ABORT : Retval = 255

Issue - State: closed - Opened by DrrDom 11 months ago - 1 comment

#6506 - Singularity crashes when running heudiconv fmri data conversion

Issue - State: closed - Opened by John-Chin 11 months ago - 1 comment

#6506 - Singularity crashes when running heudiconv fmri data conversion

Issue - State: closed - Opened by John-Chin 11 months ago - 1 comment

#6505 - [Usage] How to pass an inline argument for singularity shell call?

Issue - State: closed - Opened by physicistsam 11 months ago - 1 comment

#6505 - [Usage] How to pass an inline argument for singularity shell call?

Issue - State: closed - Opened by physicistsam 11 months ago - 1 comment

#6504 - Runtime comparing to VM google cloud

Issue - State: closed - Opened by Fadwa7 12 months ago - 1 comment

#6504 - Runtime comparing to VM google cloud

Issue - State: closed - Opened by Fadwa7 12 months ago - 1 comment

#6503 - manifest unknown

Issue - State: closed - Opened by amnah96 over 1 year ago - 1 comment

#6502 - How do you authenticate to the Github container registry

Issue - State: closed - Opened by gavargas22 over 1 year ago - 1 comment

#6501 - Failed to invoke the specified Python 3 path

Issue - State: closed - Opened by forever-happy-h over 1 year ago - 1 comment

#6500 - Singularity fails to build image on disk with sufficient space

Issue - State: closed - Opened by jhlegarreta over 1 year ago - 1 comment

#6499 - Singularity pull error: FATAL: While getting image info: error decoding image: invalid ObjectId in JSON

Issue - State: closed - Opened by hoonghim over 1 year ago - 1 comment

#6498 - Error in running def file during rpm installation

Issue - State: closed - Opened by shmily0000 over 1 year ago - 1 comment

#6497 - OpenCL unavailable in Singularity with custom CUDA installation path and additional opencl related libraries from linux repository

Issue - State: closed - Opened by vedifredi almost 2 years ago - 1 comment

#6496 - Failed to create mount namespace: mount namespace requires privileges, check Singularity installation : exit status 1

Issue - State: closed - Opened by xdgene almost 2 years ago - 1 comment

#6495 - FATAL: container creation failed: mount ERROR: while mounting image: no loop devices available

Issue - State: closed - Opened by nevesLiliane almost 2 years ago - 1 comment

#6494 - container creation failed: mount hook function failure: mount /proc/self/fd/3->/var/lib/apptainer/mnt/session/rootfs error: while mounting image /proc/self/fd/3: squashfuse_ll exited with status 255: Something went wrong trying to read the squashfs image

Issue - State: closed - Opened by 0820LL about 2 years ago - 1 comment

#6493 - Specifying --env-file returns a UID / GID readonly warning

Issue - State: closed - Opened by jmmaljaars about 2 years ago - 1 comment

#6492 - problem in binding a directory from the host machine to the singularity container

Issue - State: closed - Opened by imerelli about 2 years ago - 1 comment

#6491 - Could not change permissions for temporary file when apt update.

Issue - State: closed - Opened by zhao-yiqun about 2 years ago - 1 comment

#6490 - Options for podman alternative to docker-daemon boostrap-agent

Issue - State: closed - Opened by DevinBayly about 2 years ago - 1 comment

#6489 - After the administrator adds the fakeroot mapping, I still can't build an image as fakeroot

Issue - State: closed - Opened by ckqqqq about 2 years ago - 1 comment

#6488 - After the administrator adds the fakeroot mapping, I can't build an image as fakeroot.

Issue - State: closed - Opened by ckqqqq about 2 years ago - 1 comment

#6487 - In dir.create(gsub(basename(args$out), "", args$out), recursive = TRUE) : cannot create dir

Issue - State: closed - Opened by ElenaSLuis about 2 years ago - 1 comment

#6486 - Singularity env value containing a $$ get's converted to random number

Issue - State: closed - Opened by stmlange over 2 years ago - 1 comment

#6485 - root filesystem extraction failed: extract command failed: ERROR : Failed to create user namespace

Issue - State: closed - Opened by ElenaSLuis over 2 years ago - 1 comment

#6484 - Ability in ECL to disable run-time options based on security profile

Issue - State: closed - Opened by nrcfieldsa over 2 years ago - 1 comment

#6483 - run prevented during ECL path check on dir owned by another user

Issue - State: closed - Opened by nrcfieldsa over 2 years ago - 1 comment

#6482 - [feature request] Support Intel GPU

Issue - State: closed - Opened by houyushan over 2 years ago - 1 comment

#6481 - Singularity library not working (sylabs domain expired?)

Issue - State: closed - Opened by Davte over 2 years ago - 1 comment

#6480 - Remove dependabot

Pull Request - State: closed - Opened by DrDaveD over 2 years ago

#6479 - build(deps): bump gotest.tools/v3 from 3.0.3 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#6478 - building singularity image remotely with files in local directory on the local host

Issue - State: closed - Opened by zyzhang1992 over 2 years ago - 1 comment

#6477 - symbol lookup error: singularity: undefined symbol: seccomp_notify_respond

Issue - State: closed - Opened by prehensilecode over 2 years ago - 1 comment

#6476 - Singularity lolcow image run fails

Issue - State: closed - Opened by Nils19024 over 2 years ago - 1 comment

#6475 - remove reference to maintaining the 3.8 branch

Pull Request - State: closed - Opened by DrDaveD over 2 years ago

#6474 - Disable dependabot

Pull Request - State: closed - Opened by DrDaveD over 2 years ago

#6473 - build(deps): bump github.com/containers/image/v5 from 5.17.0 to 5.23.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#6472 - build(deps): bump github.com/opencontainers/selinux from 1.10.0 to 1.10.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#6471 - I am getting this error when I try to run singularity in HPC(note I've loaded singularity module already)- singularity: error while loading shared libraries: libseccomp.so.2: cannot open shared object file: No such file or directory

Issue - State: closed - Opened by vipingautam1906 over 2 years ago - 1 comment

#6470 - I am getting this error when I try to run singularity in HPC(note I've loaded singularity module already)singularity: error while loading shared libraries: libseccomp.so.2: cannot open shared object file: No such file or directory

Issue - State: closed - Opened by vipingautam1906 over 2 years ago - 1 comment

#6455 - Runscript is being timed out after 1m0s

Issue - State: closed - Opened by P-Sood over 2 years ago - 2 comments

#6416 - Switch apptainer to singularity in deb release

Pull Request - State: closed - Opened by DrDaveD almost 3 years ago - 1 comment

#6338 - error when decrypt

Issue - State: closed - Opened by heibaidaolx123 about 3 years ago - 3 comments
Labels: NeedsInvestigation

#6270 - inspect all "unhandled error" and clean up appropriately

Issue - State: closed - Opened by PaulCharlton over 3 years ago - 1 comment
Labels: Enhancement

#6243 - Fuse options not working

Issue - State: closed - Opened by maflister over 3 years ago - 2 comments
Labels: Enhancement

#6242 - Non-standard home folder location: FATAL container creation failed: failed to add as session directory: path . is not an absolute path

Issue - State: closed - Opened by shawarden over 3 years ago - 9 comments
Labels: NeedsInvestigation

GitHub / apptainer/singularity issues and pull requests