Ecosyste.ms: Issues

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GitHub / apetkau/core-phylogenomics issues and pull requests

#22 - Smalt fails with compressed fasta files

Issue - State: open - Opened by csieffert over 9 years ago

#21 - Feature reorder snp matrix tree

Pull Request - State: closed - Opened by csieffert over 9 years ago - 1 comment

#20 - Feature reorder snp matrix tree

Pull Request - State: closed - Opened by csieffert almost 10 years ago

#19 - Removal of all references to --contig-dir option

Pull Request - State: closed - Opened by csieffert almost 10 years ago - 7 comments

#18 - Remove --contig-dir option

Issue - State: closed - Opened by apetkau almost 10 years ago - 1 comment

#17 - Updated vcf2pseudoalign

Pull Request - State: closed - Opened by apetkau almost 10 years ago

#16 - Calling SNPs on non-fastq files

Issue - State: open - Opened by nknox almost 10 years ago - 1 comment

#15 - Development

Pull Request - State: closed - Opened by csieffert almost 10 years ago - 7 comments

#14 - Updating vcf2pseudoalignment sub module.

Pull Request - State: closed - Opened by csieffert almost 10 years ago - 1 comment

#13 - Submodule added to verify unique input file names.

Pull Request - State: closed - Opened by csieffert almost 10 years ago - 11 comments

#12 - Add error checking for duplicate files names for input files

Issue - State: closed - Opened by apetkau almost 10 years ago - 1 comment

#11 - fix bug where invalid position file was required and not optional when using --contig-dir

Pull Request - State: closed - Opened by Takadonet about 10 years ago - 1 comment

#10 - Cleanup of temporary SAM and BAM files

Pull Request - State: closed - Opened by apetkau about 10 years ago

#9 - Cleanup unneeded files

Issue - State: closed - Opened by apetkau about 10 years ago - 1 comment

#8 - Fixed up issue with git commit number not showing for vcf2pseudoalign

Pull Request - State: closed - Opened by apetkau over 10 years ago

#7 - Some line options generated for lib/reads2sams.pl are incorrect

Issue - State: open - Opened by apetkau over 10 years ago - 1 comment

#6 - vcf2pseudoalign git commit reported as unknown

Issue - State: closed - Opened by apetkau over 10 years ago - 1 comment

#5 - vcf2core stage causes delays when generating core genome images

Issue - State: closed - Opened by apetkau over 10 years ago - 5 comments

#4 - Feature/phylip long

Pull Request - State: closed - Opened by apetkau over 10 years ago

#3 - Feature/update install process

Pull Request - State: closed - Opened by apetkau over 10 years ago