anuradhawick/lrbinner issues and pull requests

#24 - Compressed FASTQ files for read binning?

Issue - State: open - Opened by yzhernand about 1 month ago

#23 - Could we use LRBinner after scaffolding in WGA?

Issue - State: open - Opened by franztastic 5 months ago - 5 comments

#22 - Questions about parameter optimization for strict binning

Issue - State: closed - Opened by franciscozorrilla 6 months ago - 1 comment

#21 - Install fail - hmmer version out-of-date

Issue - State: open - Opened by Krannich479 8 months ago - 1 comment

#20 - test / example data no longer available (dead link)

Issue - State: open - Opened by travc 9 months ago - 4 comments

#19 - Contigs binning -marker genes/hmmout problem

Issue - State: open - Opened by Nafson194 9 months ago - 6 comments

#18 - HDBSCAN TypeError when binning contigs

Issue - State: open - Opened by pabloati over 1 year ago

#17 - Lrbinner deleted a directory?

Issue - State: closed - Opened by lidi4 over 1 year ago - 2 comments
Labels: bug

#16 - extract bins

Issue - State: closed - Opened by Montmerry over 1 year ago - 2 comments

#15 - Running LRBinner with several reads files?

Issue - State: closed - Opened by psj1997 over 1 year ago - 4 comments

#14 - Errors withinit() got an unexpected keyword argument 'cachedir'

Issue - State: closed - Opened by echoduan almost 2 years ago - 3 comments

#13 - error with separate_reads.py

Issue - State: open - Opened by thulasis almost 2 years ago - 2 comments

#12 - error when counting 15-mers

Issue - State: closed - Opened by lewhiteside almost 2 years ago - 5 comments

#11 - ground truth file for eval.py?

Issue - State: closed - Opened by tomsauv about 2 years ago - 8 comments

#10 - Error while searching for marker genes

Issue - State: closed - Opened by krithikaarumugam over 2 years ago - 3 comments
Labels: bug

#9 - running on frameshift corrected contigs

Issue - State: open - Opened by chiaramazzoni over 2 years ago - 1 comment

#8 - question about the parameters -mbs -bc -bs --ae-dims --ae-epochs

Issue - State: closed - Opened by wn835166087 almost 3 years ago - 3 comments

#7 - build failure

Issue - State: closed - Opened by wn835166087 almost 3 years ago - 9 comments

#6 - Build error: ISO C++ 2011 standard

Issue - State: closed - Opened by LynnLy almost 3 years ago - 1 comment

#5 - "Clustering using HDBSCAN running" step dows not complete

Issue - State: open - Opened by crastr almost 3 years ago - 7 comments

#4 - Computing Contig Length Error

Issue - State: open - Opened by cazzlewazzle89 about 3 years ago - 7 comments

#3 - No bins from test data

Issue - State: closed - Opened by cazzlewazzle89 about 3 years ago - 2 comments

#2 - Conda Environment for Dependencies

Issue - State: closed - Opened by cazzlewazzle89 about 3 years ago - 10 comments

#1 - KeyError with cluster_utils.py

Issue - State: closed - Opened by GeoMicroSoares over 3 years ago - 11 comments

Ecosyste.ms: Issues

GitHub / anuradhawick/lrbinner issues and pull requests