anergictcell/hpo issues and pull requests

#66 - Bump to 0.11.0

Pull Request - State: closed - Opened by anergictcell 5 months ago

#65 - Add `Builder` struct and refactor documentation

Pull Request - State: closed - Opened by anergictcell 6 months ago

#64 - Latest HPO cannot be loaded

Issue - State: closed - Opened by holtgrewe 7 months ago - 2 comments

#63 - Add missing orpha features

Pull Request - State: closed - Opened by anergictcell 8 months ago

#62 - Release/0.10.0

Pull Request - State: closed - Opened by anergictcell 8 months ago

#61 - Feature/orphanet

Pull Request - State: closed - Opened by anergictcell 8 months ago

#60 - Internalize code from statrs crate to reduce dependencies

Pull Request - State: closed - Opened by anergictcell 10 months ago

#59 - Refactor/reorder ontology

Pull Request - State: closed - Opened by anergictcell 10 months ago

#58 - Refactor/error handling

Pull Request - State: closed - Opened by anergictcell 10 months ago

#57 - Version bump to 0.9.1

Pull Request - State: closed - Opened by anergictcell 10 months ago

#56 - fix: Fixes typo in SimilarityCombiner (BWA --> BMA)

Pull Request - State: closed - Opened by anergictcell 10 months ago

#55 - Version bump to 0.9.0

Pull Request - State: closed - Opened by anergictcell 11 months ago

#54 - Change Gene - Term associations

Pull Request - State: closed - Opened by anergictcell 11 months ago

#53 - Add export to graphviz

Pull Request - State: closed - Opened by apraga 11 months ago - 4 comments

#52 - Version bump to 0.8.3.

Pull Request - State: closed - Opened by anergictcell 11 months ago

#51 - Fix JC similarity

Pull Request - State: closed - Opened by anergictcell 11 months ago

#50 - Minor typo in HpoTerm

Pull Request - State: closed - Opened by apraga 11 months ago

#49 - Searching OMIM disease by name (partial match)

Pull Request - State: closed - Opened by apraga 11 months ago - 3 comments

#48 - Update README

Pull Request - State: closed - Opened by anergictcell 11 months ago

#47 - Update README with downloading HPO data

Pull Request - State: closed - Opened by apraga 11 months ago - 3 comments

#46 - Derive Clone for Ontology (#45)

Pull Request - State: closed - Opened by holtgrewe over 1 year ago

#45 - Derive Clone for Ontology

Issue - State: closed - Opened by holtgrewe over 1 year ago - 4 comments

#44 - Recent HPO versions include all parents in gene to phenotype associations

Issue - State: closed - Opened by holtgrewe over 1 year ago - 3 comments

#43 - Release/0.8.0

Pull Request - State: closed - Opened by anergictcell over 1 year ago

#42 - Public Matrix struct

Pull Request - State: closed - Opened by anergictcell over 1 year ago

#41 - Clustering algorithms for Linkage analysis

Pull Request - State: closed - Opened by anergictcell over 1 year ago

#40 - Public use of matrix::Matrix in lib.rs (#38)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago - 1 comment

#39 - Deriving Debug trait for more types (#37)

Pull Request - State: closed - Opened by holtgrewe almost 2 years ago - 1 comment

#38 - Matrix type not public?

Issue - State: closed - Opened by holtgrewe almost 2 years ago - 1 comment

#37 - Derive Debug more often?

Issue - State: closed - Opened by holtgrewe almost 2 years ago - 2 comments

#36 - Release/0.7.0

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#35 - Use SmallVec for HpoGroup

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#34 - Add categories for HPO Terms

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#33 - Use Into<HpoTermID> as standard argument in public interfaces

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#32 - Improve documentation

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#31 - Fixes #30 New JAX-HPO source format

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#30 - Cannot run examples with HPO data from GitHub

Issue - State: closed - Opened by holtgrewe almost 2 years ago - 1 comment

#29 - Hotfix/subontology

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#28 - Add benchmark tests

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#27 - Revert "Add benchmark tests"

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#26 - Add benchmark tests

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#25 - Add missing documentations

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#24 - Release/0.6.0

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#23 - Add thread-safe caching to similarity calculations

Issue - State: open - Opened by anergictcell almost 2 years ago

#22 - Implements #14 Replace and/or remove obsolete terms in an HpoSet

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#21 - Add git workflow

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#20 - Binary v2 with obosolete terms

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#19 - Refactor modules

Issue - State: closed - Opened by anergictcell almost 2 years ago

#18 - Release/0.5.0

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#17 - Add Documentation and new Iterators

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#16 - Include HPO-release number in binary data and Ontology

Issue - State: closed - Opened by anergictcell almost 2 years ago - 1 comment

#15 - Binary data versioning

Issue - State: closed - Opened by anergictcell almost 2 years ago - 1 comment

#14 - Remove or replace obsolete terms in an HpoSet

Issue - State: closed - Opened by anergictcell almost 2 years ago

#13 - Obsolete HpoTerm

Issue - State: closed - Opened by anergictcell almost 2 years ago - 1 comment

#12 - Categorize HpoTerms

Issue - State: closed - Opened by anergictcell almost 2 years ago

#11 - Add new Similarity algorithm -> Mutation

Pull Request - State: closed - Opened by anergictcell almost 2 years ago

#10 - Release/0.4.0

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#9 - Add sub-ontology feature and mermaid code generation

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#8 - New feature to compare to ontologies with each other

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#7 - Add hypergeometric enrichment

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#6 - Adaptations for use in hpo3

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#5 - Add Hposet and default Similarity algorithms

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#4 - Fix suggestions from clippy

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#3 - Add basic documentation

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#2 - Read from and create custom Ontology files

Pull Request - State: closed - Opened by anergictcell about 2 years ago

#1 - First working PoC

Pull Request - State: closed - Opened by anergictcell about 2 years ago

GitHub / anergictcell/hpo issues and pull requests