Ecosyste.ms: Issues
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GitHub / andrewhill157/leiden issues and pull requests
#47 - Bump wheel from 0.23.0 to 0.38.1
Pull Request -
State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies
#46 - Gene list fetching for LOVD3 databases now fetches all genes and not just the first page.
Pull Request -
State: open - Opened by falquaddoomi almost 8 years ago
#45 - _LOVD3GeneData occasionally fails when attempting to extract text from a field that begins with HTML
Issue -
State: open - Opened by falquaddoomi almost 8 years ago
#44 - _LOVD3Database doesn't acquire full list of genes
Issue -
State: open - Opened by falquaddoomi almost 8 years ago
#43 - Update validation script command line interface
Issue -
State: open - Opened by andrewhill157 over 10 years ago
#42 - Splice/Intron/UTR Variant Validation
Issue -
State: open - Opened by andrewhill157 over 10 years ago
#41 - Look into changing to VEP Remapping
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
- 2 comments
#40 - Loosen Broad Cluster Dependencies
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
- 1 comment
Labels: enhancement
#39 - Loosen Broad Cluster Dependencies
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
#38 - Test Issue
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
#37 - Write code to generate pseudo-VCF output files
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
#36 - Look into REST API service for LOVD
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
#35 - Split remapped entries into CHROM #, COORDINATE, REF, ALT in output file
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
- 1 comment
#34 - Some LOVD3 genes list multiple reference transcripts
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
- 2 comments
#33 - Handle empty entries on database more gracefully
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
- 2 comments
#32 - Integrate Mutalyzer WebServices to automate remapping
Issue -
State: closed - Opened by andrewhill157 over 10 years ago
- 10 comments
#31 - Ensure header label extraction is robust.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: enhancement
#30 - Ensure data sent to Monkol has consistent header ordering
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 2 comments
#29 - Add Full LOVD3 Support
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 2 comments
#28 - Introduce better error handling for link extraction
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: enhancement
#27 - Fix bug: genes with over 1000 entries are cut off at 1000 with current script
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 2 comments
Labels: bug
#26 - Discuss DMD variants with monkol
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: question
#25 - Clean up file delimiter and file naming inconsistencies.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: enhancement
#24 - Look into extracting data from entire Leiden Database
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 4 comments
#23 - Modify initial filetering of extracted Leiden Data
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
Labels: enhancement
#22 - Discuss validation more closely with Monkol.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: question
#21 - Discuss Indels with Monkol
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: question
#20 - Add unit tests
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 2 comments
Labels: enhancement
#19 - Start using pycharms IDE
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
#18 - Migrate code to Python 3.3
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
#17 - Update documentation
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
#16 - Update all command line arguments to argsparse.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 2 comments
#15 - Look into better command line interfaces
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
#14 - Examine failures in variant extraction, remapping, and combination with original data.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
#13 - Fix line break error in data extraction script
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: bug
#12 - Make function that can automatically rename mutalyzer downloads
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 2 comments
Labels: enhancement
#11 - Make command line scripts have process all and process lists of specific inputs functionality.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
#10 - Investigate how hard it would be to port open refine recipe to python.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
#9 - Make a script to combine mutalyzer output and original input files.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
#8 - Process additional genes from Leiden and send to Monkol.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
#7 - Examine flags in processed annotation data to determine causes.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
Labels: todo
#6 - Add script to flag mutations in Monkol's annotation data.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
#5 - Fix body position when header changes for smaller screen sizes.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
Labels: bug
#4 - Need to validate mappings from mutalyzer output.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
Labels: question
#3 - Need to finish proper notation of non-SNP variants to a VCF like format.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
Labels: enhancement, question
#2 - Finalize which columns of data to include in open refine output and their format.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
- 1 comment
Labels: question
#1 - Add refseq id automatic extraction.
Issue -
State: closed - Opened by andrewhill157 almost 11 years ago
Labels: enhancement