Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / amplab/smash issues and pull requests
#25 - Bump junit from 4.11 to 4.13.1 in /calldiff
Pull Request -
State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies
#24 - Upgrade genomics version to match GA4GH v0.5.1
Pull Request -
State: closed - Opened by cassiedoll almost 10 years ago
#23 - Adds the --nolocalserver flag and supporting authentication flow
Pull Request -
State: closed - Opened by mbookman almost 10 years ago
#22 - Enable command line specification of VCF files or callsetIds
Pull Request -
State: closed - Opened by chapmanb about 10 years ago
- 2 comments
#21 - Kelly's super cool java program for comparing variant sets
Pull Request -
State: closed - Opened by kwestbrooks about 10 years ago
#20 - output stats in JSON
Issue -
State: closed - Opened by jn80842 about 10 years ago
- 1 comment
Labels: enhancement
#19 - standardize output stats
Issue -
State: closed - Opened by jn80842 about 10 years ago
- 1 comment
#18 - compare bases case-insensitively
Issue -
State: closed - Opened by jn80842 about 10 years ago
- 1 comment
#17 - output vcf file discards original INFO field
Issue -
State: closed - Opened by jn80842 about 10 years ago
- 1 comment
#16 - error rates should be in proportion to variant category
Issue -
State: closed - Opened by jn80842 about 10 years ago
- 1 comment
#15 - SMaSH uses too much memory
Issue -
State: closed - Opened by jn80842 about 10 years ago
- 1 comment
#14 - support inversions with leading base
Issue -
State: closed - Opened by jn80842 over 10 years ago
- 1 comment
#13 - SMaSH crashes on VCFs with no genotyping information at all
Issue -
State: closed - Opened by jn80842 over 10 years ago
- 1 comment
#12 - annotated VCF output from bench.py is not sorted by position
Issue -
State: closed - Opened by jn80842 over 10 years ago
- 1 comment
#11 - Update README.md
Pull Request -
State: closed - Opened by godotgildor over 10 years ago
- 1 comment
#10 - Variant with N ref/alt alleles causes normalization to throw an exception
Issue -
State: closed - Opened by jn80842 over 10 years ago
- 1 comment
#9 - if initial base of one variant is deleted by another, SMaSH fails to rescue
Issue -
State: open - Opened by jn80842 over 10 years ago
#8 - SMaSH does not evaluate compound het variants correctly
Issue -
State: open - Opened by jn80842 over 10 years ago
#7 - normalized variant can be placed at same position as existing variant
Issue -
State: closed - Opened by jn80842 over 10 years ago
- 1 comment
#6 - Here is the system test we discussed
Pull Request -
State: closed - Opened by kwestbrooks over 10 years ago
#5 - Option to write out "rescued" version of second input vcf
Issue -
State: closed - Opened by jn80842 over 10 years ago
- 1 comment
Labels: enhancement
#4 - Factor out unnecessary asserts
Issue -
State: open - Opened by jn80842 over 10 years ago
#3 - Preserve genotype information when outputting vcf files
Issue -
State: closed - Opened by jn80842 over 10 years ago
- 1 comment
#2 - Add documentation source code to repository
Issue -
State: open - Opened by spaugh over 10 years ago
#1 - Push SMaSH towards easier programmatic use
Pull Request -
State: closed - Opened by spaugh almost 11 years ago
- 6 comments