Ecosyste.ms: Issues

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GitHub / amcdavid/CellaRepertorium issues and pull requests

#15 - Posibility to control all options of cd-hit-est

Issue - State: open - Opened by piosierra 11 months ago - 1 comment

#14 - Incomprehensible results when using CD-HIT with a FASTA file

Issue - State: open - Opened by wardiam over 1 year ago - 4 comments

#14 - Incomprehensible results when using CD-HIT with a FASTA file

Issue - State: open - Opened by wardiam over 1 year ago - 4 comments

#13 - Option -r 1 in cdhit-est does not work

Issue - State: open - Opened by SamaZYX almost 2 years ago - 2 comments

#12 - replace_cluster_tbl names wrong argument when replacing

Issue - State: open - Opened by amcdavid over 2 years ago

#11 - updated cluster_permute_test to include permuted statistic values

Pull Request - State: closed - Opened by awagna almost 3 years ago - 1 comment

#10 - Need functionality to infer dual-chain clonotypes

Issue - State: open - Opened by amcdavid over 3 years ago - 2 comments

#9 - plot_clustering.R function added

Pull Request - State: closed - Opened by awagna over 3 years ago

#8 - R 4.0.3 compatibility

Issue - State: closed - Opened by tai-mi over 3 years ago - 7 comments

#6 - Test that !is.function(chain_recode_fun)

Issue - State: closed - Opened by amcdavid almost 4 years ago

#5 - Cells with no contigs need a better name in enumerate_pairing

Issue - State: closed - Opened by amcdavid almost 4 years ago - 1 comment

#4 - ccdb_join function with unit tests

Pull Request - State: closed - Opened by vonkaenelerik almost 4 years ago

#3 - Warnings about factors coerced to character in `pairing_tables`

Issue - State: open - Opened by amcdavid almost 5 years ago

#2 - Obsolete functions

Issue - State: closed - Opened by amcdavid about 5 years ago

#1 - cdhit AA results change when DNA is run first

Issue - State: closed - Opened by amcdavid about 5 years ago - 1 comment