Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / amarquand/PCNtoolkit issues and pull requests

#148 - Write unit tests for essential functionality

Issue - State: closed - Opened by AuguB about 1 year ago - 1 comment

#147 - Configure CI pipeline

Issue - State: closed - Opened by AuguB about 1 year ago - 2 comments

#146 - Add formatter config and requirement to contributing.d

Issue - State: closed - Opened by AuguB about 1 year ago
Labels: enhancement

#145 - Write docstring for all functions and classes

Issue - State: closed - Opened by AuguB about 1 year ago - 2 comments
Labels: documentation

#144 - Improve keyword argument naming

Issue - State: open - Opened by AuguB about 1 year ago - 1 comment
Labels: enhancement

#143 - Update installation instructions to show Python 3.10

Issue - State: closed - Opened by AuguB about 1 year ago
Labels: documentation

#142 - Problem calculating z-score in predict

Issue - State: closed - Opened by lincong8722 about 1 year ago - 2 comments

#141 - bug fix: in collect_nm if batch_size = 1 and extension = .txt

Pull Request - State: closed - Opened by AntoineBernas over 1 year ago

#140 - a question about transfer

Issue - State: open - Opened by moheng1214 over 1 year ago - 5 comments
Labels: bug

#138 - problem when using 'predict' for a HBR model

Issue - State: closed - Opened by weiwei-wch over 1 year ago - 10 comments
Labels: bug

#137 - Update installation information for sklearn

Issue - State: closed - Opened by glick094 over 1 year ago - 1 comment
Labels: bug

#136 - Dev

Pull Request - State: closed - Opened by amarquand over 1 year ago

#135 - cleaning up

Pull Request - State: closed - Opened by amarquand over 1 year ago

#134 - Dev

Pull Request - State: closed - Opened by amarquand over 1 year ago

#133 - Use Pymc Modelbuilder API for easier deployment

Issue - State: open - Opened by AuguB over 1 year ago
Labels: enhancement

#132 - version 0.28

Pull Request - State: closed - Opened by amarquand over 1 year ago

#131 - Transfer functionalty implemented

Pull Request - State: closed - Opened by amarquand over 1 year ago

#130 - Dev pymc shash kwargs

Pull Request - State: closed - Opened by amarquand over 1 year ago

#129 - Dev

Pull Request - State: closed - Opened by CharFraza over 1 year ago

#128 - Allowing predict function to return Y for longitudinal data analysis

Pull Request - State: closed - Opened by bbuckova over 1 year ago

#127 - Dev pymc normal

Pull Request - State: closed - Opened by amarquand almost 2 years ago

#126 - Dev pymc normal

Pull Request - State: closed - Opened by AuguB almost 2 years ago

#125 - Dev pymc full

Pull Request - State: closed - Opened by AuguB almost 2 years ago - 1 comment

#124 - Dev pymc coords

Pull Request - State: closed - Opened by AuguB almost 2 years ago

#123 - Removed SHASH from the utils file

Pull Request - State: closed - Opened by amarquand almost 2 years ago

#122 - Dev pymc normal

Pull Request - State: closed - Opened by amarquand almost 2 years ago

#121 - about GPR model problem

Issue - State: closed - Opened by kkaiwang07 almost 2 years ago

#120 - Problem in apply_normative_models.ipynb with colab

Issue - State: closed - Opened by hanbing-gao almost 2 years ago - 3 comments

#119 - shape of the centiles

Issue - State: closed - Opened by iamjoostjanssen almost 2 years ago - 2 comments

#118 - Problem with applying warps to data

Issue - State: closed - Opened by m-petersen almost 2 years ago - 4 comments

#117 - List of HBR improvements

Issue - State: closed - Opened by AuguB almost 2 years ago - 1 comment
Labels: enhancement

#116 - Update `predict` to save to a save_path

Issue - State: open - Opened by glick094 almost 2 years ago
Labels: enhancement

#115 - Standardisation with warping

Issue - State: closed - Opened by Elleaume almost 2 years ago - 2 comments

#113 - Syntax error in normative.py (and a fix)

Issue - State: closed - Opened by jerke123 almost 2 years ago - 2 comments

#112 - Merge pull request #111 from amarquand/dev

Pull Request - State: closed - Opened by amarquand almost 2 years ago

#111 - Dev

Pull Request - State: closed - Opened by amarquand almost 2 years ago

#110 - Dev stijn fix

Pull Request - State: closed - Opened by amarquand about 2 years ago

#109 - ImportError: cannot import name 'asscalar' from 'numpy'

Issue - State: closed - Opened by zapaishchykova about 2 years ago - 3 comments

#108 - Ensure kwargs str

Pull Request - State: closed - Opened by CharFraza about 2 years ago

#107 - conflict with python==3.10

Issue - State: closed - Opened by candemircan about 2 years ago - 1 comment

#106 - Dev

Pull Request - State: closed - Opened by amarquand over 2 years ago

#105 - fix module index docs

Pull Request - State: closed - Opened by amarquand over 2 years ago

#104 - update docs

Pull Request - State: closed - Opened by amarquand over 2 years ago

#103 - git sync

Pull Request - State: closed - Opened by amarquand over 2 years ago

#102 - Dev

Pull Request - State: closed - Opened by amarquand over 2 years ago

#101 - bugfix transfer and parallel

Pull Request - State: closed - Opened by PBarkema over 2 years ago

#100 - AttributeError: 'NormBLR' object has no attribute 'theta0'

Issue - State: closed - Opened by zzstefan over 2 years ago - 1 comment

#99 - Pull request transform + parallel changes

Pull Request - State: closed - Opened by PBarkema over 2 years ago - 1 comment

#98 - [Question] Is there a way to get the parameters from the model?

Issue - State: closed - Opened by alegiac95 over 2 years ago - 1 comment

#97 - Interpretation of CI in GPR model

Issue - State: closed - Opened by arokem over 2 years ago - 1 comment

#96 - GPR-model predict problem

Issue - State: closed - Opened by kkaiwang07 over 2 years ago - 2 comments

#95 - HBR.create_dummy_input

Issue - State: closed - Opened by AuguB over 2 years ago - 1 comment

#94 - Update CHANGES

Pull Request - State: closed - Opened by amarquand over 2 years ago

#93 - Dev

Pull Request - State: closed - Opened by amarquand over 2 years ago

#92 - update dev

Pull Request - State: closed - Opened by amarquand over 2 years ago

#91 - Failed to import pcntoolkit with numpy>=1.23

Issue - State: closed - Opened by gkane26 over 2 years ago - 9 comments

#90 - Bug when loading PCN

Issue - State: closed - Opened by royhaast over 2 years ago - 3 comments

#89 - Bug in metric evaluation for warped BLR

Issue - State: closed - Opened by marlvan over 2 years ago - 1 comment

#88 - Dev

Pull Request - State: closed - Opened by amarquand over 2 years ago

#87 - New published version (0.24) bugs

Issue - State: closed - Opened by alegiac95 over 2 years ago - 7 comments

#86 - Dev

Pull Request - State: closed - Opened by amarquand over 2 years ago

#85 - Dev

Pull Request - State: closed - Opened by amarquand over 2 years ago

#84 - Dev

Pull Request - State: closed - Opened by amarquand almost 3 years ago

#83 - BUG in production code: predict function Z scores

Issue - State: closed - Opened by alegiac95 almost 3 years ago - 8 comments

#82 - Added SHASHo, SHASHo2, SHASHb support for hbr

Pull Request - State: closed - Opened by AuguB almost 3 years ago

#81 - minor updates to documentation

Pull Request - State: closed - Opened by amarquand almost 3 years ago

#80 - synchronise master and dev

Pull Request - State: closed - Opened by amarquand almost 3 years ago

#79 - synchronise master and dev

Pull Request - State: closed - Opened by amarquand almost 3 years ago

#78 - Dev

Pull Request - State: closed - Opened by amarquand almost 3 years ago

#77 - Error in running the predict function

Issue - State: closed - Opened by alegiac95 about 3 years ago - 1 comment

#76 - HBR model estimation failing: <class 'IndexError'> normative.py 428

Issue - State: closed - Opened by jakepalmer about 3 years ago - 3 comments

#75 - Link to Saige's tutorial in the readme is dead

Issue - State: closed - Opened by AuguB about 3 years ago - 1 comment

#74 - Import get_package_versions correctly

Pull Request - State: closed - Opened by CharFraza about 3 years ago

#73 - Warped Bayesian linear regression model

Issue - State: closed - Opened by zqsha about 3 years ago - 1 comment

#72 - Dev

Pull Request - State: closed - Opened by amarquand over 3 years ago

#71 - Add different noise distributions for the warp BLR test

Pull Request - State: closed - Opened by CharFraza over 3 years ago

#70 - Adjust the l-bfgs-b optimizer to restart when matrix is singular.

Pull Request - State: closed - Opened by CharFraza over 3 years ago

#69 - Errors: No module named 'nm_utils'

Issue - State: closed - Opened by bsjeong over 3 years ago - 1 comment

#68 - Dev

Pull Request - State: closed - Opened by amarquand over 3 years ago

#67 - documentation on HBR models

Pull Request - State: closed - Opened by pierreberthet over 3 years ago

#66 - Dev pierre on HBR tutorial

Pull Request - State: closed - Opened by pierreberthet over 3 years ago

#65 - Add transfer function BLR

Pull Request - State: closed - Opened by CharFraza over 3 years ago

#64 - Confusions about optimization outputs

Issue - State: closed - Opened by LINCiii over 3 years ago - 1 comment

#63 - add a link to the readthedocs documentation

Issue - State: closed - Opened by robertoostenveld over 3 years ago - 1 comment

#62 - Fixed kwarg.pop issue on serial jobs by using kwargs.get instead

Pull Request - State: closed - Opened by pierreberthet over 3 years ago

#61 - Dev

Pull Request - State: closed - Opened by CharFraza over 3 years ago

#60 - Fix Module Index on readthedocs

Issue - State: closed - Opened by saigerutherford over 3 years ago - 1 comment
Labels: bug, help wanted

#59 - Review function documentation

Issue - State: closed - Opened by saigerutherford over 3 years ago
Labels: enhancement, help wanted

#58 - Add FAQ page

Issue - State: closed - Opened by saigerutherford over 3 years ago - 1 comment
Labels: enhancement, help wanted

#57 - Add items to glossary page

Issue - State: closed - Opened by saigerutherford over 3 years ago
Labels: enhancement, help wanted

#56 - Add HBR tutorial

Issue - State: closed - Opened by saigerutherford over 3 years ago
Labels: enhancement, help wanted

#55 - revamping the documentation

Pull Request - State: closed - Opened by saigerutherford over 3 years ago - 1 comment

#54 - Dev

Pull Request - State: closed - Opened by CharFraza over 3 years ago

#53 - Add BIC score calculation and save automatic the BIC score and NLL

Pull Request - State: closed - Opened by CharFraza almost 4 years ago - 2 comments

#52 - Update setup.py

Pull Request - State: closed - Opened by amarquand almost 4 years ago

#51 - Dev

Pull Request - State: closed - Opened by amarquand almost 4 years ago - 1 comment

#50 - Dev

Pull Request - State: closed - Opened by amarquand almost 4 years ago

#49 - Theano-PyMC version mismatch

Issue - State: closed - Opened by sunhuaiqiang almost 4 years ago - 2 comments