Ecosyste.ms: Issues

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GitHub / amarquand/PCNtoolkit issues and pull requests

#214 - Runs the testHBR script correctly on pymc==5.16

Pull Request - State: closed - Opened by amarquand 15 days ago

#213 - Pymc version 5.13 breaks HBR

Issue - State: open - Opened by AuguB 18 days ago

#212 - Dev

Pull Request - State: closed - Opened by amarquand 4 months ago

#211 - adjusted setup.py

Pull Request - State: closed - Opened by amarquand 4 months ago

#210 - Dev

Pull Request - State: closed - Opened by amarquand 4 months ago

#209 - update requirements.txt

Pull Request - State: closed - Opened by amarquand 4 months ago

#208 - Dev

Pull Request - State: closed - Opened by amarquand 4 months ago

#207 - Bug fix: transfer.get_mcmc_quantiles

Pull Request - State: closed - Opened by likeajumprope 4 months ago

#206 - A problem with scipy version

Issue - State: closed - Opened by wangzhe73 5 months ago - 3 comments

#205 - Odd metrics from normative.estimate

Issue - State: closed - Opened by MattFill 5 months ago - 3 comments

#204 - Change the BSpline implementation to the Scipy one

Issue - State: open - Opened by AuguB 5 months ago

#203 - Move the transfer tutorial to the Demo repo

Issue - State: open - Opened by AuguB 5 months ago

#202 - Change the directory within the NormConf object

Issue - State: open - Opened by AuguB 5 months ago

#201 - question regarding normative trajectory GPR

Issue - State: closed - Opened by HSweatman 5 months ago - 3 comments

#198 - Compute epistemic uncertainty for quantiles

Issue - State: open - Opened by AuguB 7 months ago

#197 - Try normative parallel script

Issue - State: open - Opened by AuguB 7 months ago - 1 comment

#196 - save/load needs to store regconf for each responsevar

Issue - State: closed - Opened by AuguB 7 months ago

#195 - Pass freedom parameter to param again

Issue - State: closed - Opened by AuguB 7 months ago

#194 - Improve to_dict and from_dict methods

Issue - State: closed - Opened by AuguB 8 months ago

#193 - Implement GPR

Issue - State: open - Opened by AuguB 8 months ago

#191 - Write quantiles function for HBR

Issue - State: closed - Opened by AuguB 8 months ago

#190 - Setter for save_dir and log_dir

Issue - State: closed - Opened by AuguB 8 months ago

#188 - Make paths in normative_model_dict.json relative

Issue - State: closed - Opened by AuguB 8 months ago

#187 - map sigma and delta to positive numbers

Issue - State: closed - Opened by AuguB 9 months ago

#186 - write more extensive tests for HBR fit, predict, transfer

Issue - State: closed - Opened by AuguB 9 months ago

#185 - Create CLI

Issue - State: closed - Opened by AuguB 9 months ago

#184 - Add SHASH likelihood

Issue - State: closed - Opened by AuguB 9 months ago

#183 - Implement NormData and HBRData

Issue - State: closed - Opened by AuguB 9 months ago

#182 - Factorize posterior

Issue - State: closed - Opened by AuguB 9 months ago

#181 - finish fit, predict, transfer for HBR

Issue - State: closed - Opened by AuguB 9 months ago

#180 - Implement GPR

Issue - State: closed - Opened by likeajumprope 9 months ago

#179 - HBR Normative Modelling

Issue - State: closed - Opened by kkaiwang07 9 months ago

#178 - Re-write toolkit

Issue - State: open - Opened by AuguB 10 months ago
Labels: development

#177 - Implement NormHBR

Issue - State: closed - Opened by AuguB 10 months ago
Labels: development

#176 - Implement HBR

Issue - State: closed - Opened by AuguB 10 months ago
Labels: development

#175 - Implement NormBLR

Issue - State: open - Opened by AuguB 10 months ago
Labels: development

#174 - Implement BLR

Issue - State: open - Opened by AuguB 10 months ago
Labels: development

#173 - Make separate (standalone) modules for each of the model types

Issue - State: closed - Opened by AuguB 10 months ago
Labels: development

#172 - Start refactor with class skeleton

Issue - State: closed - Opened by AuguB 10 months ago

#171 - Dev

Pull Request - State: closed - Opened by amarquand 10 months ago

#170 - updates for readthedocs

Pull Request - State: closed - Opened by amarquand 10 months ago

#169 - updates for readthedocs

Pull Request - State: closed - Opened by amarquand 10 months ago

#168 - cleanup for v0.29

Pull Request - State: closed - Opened by amarquand 10 months ago

#167 - patch to enable v0.29 to be installed correctly from PyPI

Pull Request - State: closed - Opened by amarquand 10 months ago

#166 - Merge pull request #165 from amarquand/master

Pull Request - State: closed - Opened by amarquand 10 months ago

#165 - Merge pull request #164 from amarquand/dev

Pull Request - State: closed - Opened by amarquand 10 months ago

#164 - Dev

Pull Request - State: closed - Opened by amarquand 10 months ago

#163 - Testing Demo Notebooks - braincharts - yeo17.ipynb

Issue - State: closed - Opened by likeajumprope 10 months ago
Labels: testing

#162 - Release version 0.29

Issue - State: closed - Opened by AuguB 10 months ago - 1 comment

#161 - Make UML of the toolkit

Issue - State: closed - Opened by AuguB 10 months ago
Labels: enhancement

#160 - Testing Demo Notebooks - braincharts - smith10.ipynb

Issue - State: open - Opened by likeajumprope 10 months ago - 1 comment
Labels: bug, testing

#159 - Testing Demo Notebooks -braincharts - sa.ipynb

Issue - State: closed - Opened by likeajumprope 10 months ago - 1 comment
Labels: testing

#158 - Testing Demo Notebooks - braincharts - ct.ipynb

Issue - State: closed - Opened by likeajumprope 10 months ago
Labels: testing

#157 - Testing Demo Notebooks -Long NM

Issue - State: closed - Opened by likeajumprope 10 months ago
Labels: bug, testing

#156 - Testing Demo Notebooks - HBR SHASH

Issue - State: closed - Opened by likeajumprope 10 months ago - 4 comments
Labels: bug, testing

#155 - Testing Demo Notebooks - HBR Fcon

Issue - State: closed - Opened by likeajumprope 10 months ago - 5 comments
Labels: testing

#154 - Testing Demo Books - CPC protocol

Issue - State: closed - Opened by likeajumprope 10 months ago - 1 comment
Labels: testing

#153 - Testing Demo Books - BLR protocol -removing pcntoolkit version dependency

Issue - State: closed - Opened by likeajumprope 10 months ago - 1 comment
Labels: testing

#152 - Dev

Pull Request - State: closed - Opened by amarquand 10 months ago

#151 - Error using pcntoolkit when trying to do pcn.normative.predict()

Issue - State: closed - Opened by Lauuragn 10 months ago - 2 comments

#150 - Improving the model extension function to work on the scaled data

Issue - State: open - Opened by smkia 10 months ago
Labels: enhancement, development

#149 - Need anonymous dummy data ( for example .cifti and .nifti) for testing dataio

Issue - State: open - Opened by AuguB 10 months ago
Labels: testing

#148 - Write unit tests for essential functionality

Issue - State: open - Opened by AuguB 10 months ago - 1 comment

#147 - Configure CI pipeline

Issue - State: closed - Opened by AuguB 10 months ago - 2 comments

#146 - Add formatter config and requirement to contributing.d

Issue - State: closed - Opened by AuguB 10 months ago
Labels: enhancement

#145 - Write docstring for all functions and classes

Issue - State: closed - Opened by AuguB 10 months ago - 2 comments
Labels: documentation

#144 - Improve keyword argument naming

Issue - State: open - Opened by AuguB 10 months ago - 1 comment
Labels: enhancement

#143 - Update installation instructions to show Python 3.10

Issue - State: open - Opened by AuguB 10 months ago
Labels: documentation

#142 - Problem calculating z-score in predict

Issue - State: closed - Opened by lincong8722 10 months ago - 2 comments

#141 - bug fix: in collect_nm if batch_size = 1 and extension = .txt

Pull Request - State: closed - Opened by AntoineBernas 12 months ago

#140 - a question about transfer

Issue - State: open - Opened by moheng1214 about 1 year ago - 5 comments
Labels: bug

#138 - problem when using 'predict' for a HBR model

Issue - State: closed - Opened by weiwei-wch about 1 year ago - 10 comments
Labels: bug

#137 - Update installation information for sklearn

Issue - State: closed - Opened by glick094 about 1 year ago - 1 comment
Labels: bug

#136 - Dev

Pull Request - State: closed - Opened by amarquand about 1 year ago

#135 - cleaning up

Pull Request - State: closed - Opened by amarquand about 1 year ago

#134 - Dev

Pull Request - State: closed - Opened by amarquand about 1 year ago

#133 - Use Pymc Modelbuilder API for easier deployment

Issue - State: open - Opened by AuguB about 1 year ago
Labels: enhancement

#132 - version 0.28

Pull Request - State: closed - Opened by amarquand over 1 year ago

#131 - Transfer functionalty implemented

Pull Request - State: closed - Opened by amarquand over 1 year ago

#130 - Dev pymc shash kwargs

Pull Request - State: closed - Opened by amarquand over 1 year ago

#129 - Dev

Pull Request - State: closed - Opened by CharFraza over 1 year ago

#128 - Allowing predict function to return Y for longitudinal data analysis

Pull Request - State: closed - Opened by bbuckova over 1 year ago

#127 - Dev pymc normal

Pull Request - State: closed - Opened by amarquand over 1 year ago

#126 - Dev pymc normal

Pull Request - State: closed - Opened by AuguB over 1 year ago

#125 - Dev pymc full

Pull Request - State: closed - Opened by AuguB over 1 year ago - 1 comment

#124 - Dev pymc coords

Pull Request - State: closed - Opened by AuguB over 1 year ago

#123 - Removed SHASH from the utils file

Pull Request - State: closed - Opened by amarquand over 1 year ago

#122 - Dev pymc normal

Pull Request - State: closed - Opened by amarquand over 1 year ago

#121 - about GPR model problem

Issue - State: closed - Opened by kkaiwang07 over 1 year ago

#120 - Problem in apply_normative_models.ipynb with colab

Issue - State: closed - Opened by hanbing-gao over 1 year ago - 3 comments

#119 - shape of the centiles

Issue - State: closed - Opened by iamjoostjanssen over 1 year ago - 2 comments

#118 - Problem with applying warps to data

Issue - State: closed - Opened by m-petersen over 1 year ago - 4 comments

#117 - List of HBR improvements

Issue - State: closed - Opened by AuguB over 1 year ago - 1 comment
Labels: enhancement

#116 - Update `predict` to save to a save_path

Issue - State: open - Opened by glick094 over 1 year ago
Labels: enhancement

#115 - Standardisation with warping

Issue - State: closed - Opened by Elleaume over 1 year ago - 2 comments