alpha-unito/streamflow issues and pull requests

#132 - Bump kubernetes-asyncio from 24.2.2 to 24.2.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#131 - Bump sphinx from 6.2.1 to 7.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#130 - Improved CLI for plugin inspection

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#129 - Bump cwltool from 3.1.20230325110543 to 3.1.20230425144158

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#128 - Bump pyupgrade from 3.3.1 to 3.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#127 - Bump cwltool from 3.1.20230325110543 to 3.1.20230424211314

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#126 - Bump sphinx from 6.2.0 to 6.2.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#125 - Bump pandas from 2.0.0 to 2.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#124 - Bump importlib-metadata from 6.5.0 to 6.6.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#123 - Bump sphinx from 6.1.3 to 6.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#122 - Improved StreamFlow provenance support

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#121 - Updated JS imports from cwltool

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#120 - Bump psutil from 5.9.4 to 5.9.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#119 - Bump importlib-metadata from 6.3.0 to 6.5.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#118 - Fix InitialWorkDirRequirement with subdirs

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#117 - Bump pytest from 7.3.0 to 7.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#116 - Bump importlib-metadata from 6.3.0 to 6.4.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#115 - Bump aiosqlite from 0.18.0 to 0.19.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#114 - Bump cwl-utils from 0.23 to 0.24

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#113 - Bump pytest from 7.2.2 to 7.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#112 - Bump importlib-metadata from 6.1.0 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#111 - Added configurable DockerRequirement conversion

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#110 - Bump plotly from 5.14.0 to 5.14.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#109 - Fix Docker and Helm features

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#108 - Bump pandas from 1.5.3 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#107 - add flux framework connector

Pull Request - State: closed - Opened by vsoch over 1 year ago - 8 comments

#106 - Bump plotly from 5.13.1 to 5.14.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#105 - Bump black from 23.1.0 to 23.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#104 - Bump rdflib from 6.2.0 to 6.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#103 - Bump cwltool from 3.1.20230302145532 to 3.1.20230325110543

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#102 - Bump flake8-bugbear from 23.3.12 to 23.3.23

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#101 - Bump pytest-asyncio from 0.20.3 to 0.21.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#100 - Bump importlib-metadata from 6.0.0 to 6.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#99 - Bump rdflib from 6.2.0 to 6.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#98 - Bump rdflib from 6.2.0 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#97 - Updated and fixed StreamFlow Dockerfile

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#96 - Added explicit version check for DockerCompose

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#95 - Fix StreamFlow MPI example

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#94 - Problem with docker running as non-root

Issue - State: closed - Opened by libpoet1312 over 1 year ago - 1 comment
Labels: bug

#93 - Bump plotly from 5.11.0 to 5.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#92 - Bump pandas from 1.5.2 to 1.5.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#91 - Bump flake8-bugbear from 23.2.13 to 23.3.12

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#90 - Bump pytest-xdist from 3.2.0 to 3.2.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#89 - Migrate from `setup.py` to `pyproject.toml`

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#88 - Design question about using DAG for Kubernetes Operator

Issue - State: closed - Opened by vsoch over 1 year ago - 3 comments

#87 - Interest in adding Flux Framework

Issue - State: closed - Opened by vsoch over 1 year ago - 3 comments

#86 - Added support for nested connectors

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#85 - Bump bandit from 1.7.4 to 1.7.5

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#84 - Bump codespell from 2.2.2 to 2.2.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#83 - Fix report `--file` argument name

Pull Request - State: closed - Opened by elehcim over 1 year ago - 3 comments

#82 - Error using Helm connector with MPI example

Issue - State: open - Opened by zhangzhenhuajack over 1 year ago - 8 comments
Labels: bug

#81 - Fix CWL map processors behaviour

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#80 - Bump pytest from 7.2.1 to 7.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#79 - Bump cwltool from 3.1.20230213100550 to 3.1.20230302145532

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#78 - Bump yattag from 1.15.0 to 1.15.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#77 - Fixed MacOS compatibility

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#76 - Bump antlr4-python3-runtime from 4.11.1 to 4.12.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#75 - Bump asyncssh from 2.13.0 to 2.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#74 - Added persistence of Command class structure

Pull Request - State: closed - Opened by LanderOtto over 1 year ago - 2 comments

#73 - Bump flake8-bugbear from 23.1.20 to 23.2.13

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#72 - Bump aiohttp from 3.8.3 to 3.8.4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#71 - Bump cwltool from 3.1.20230209161050 to 3.1.20230213100550

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#70 - Stricter type checking for CWL outputs

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#69 - Bump cwltool from 3.1.20230201224320 to 3.1.20230209161050

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#68 - Bump sphinx-rtd-theme from 1.1.1 to 1.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#67 - Bump pytest-xdist from 3.1.0 to 3.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#66 - Moving some logic from Translator to utils

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#65 - Register job directories after creating them

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#64 - Moving aiotarstream to the deployment module

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#63 - Use JSON format for PBS output

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#62 - Bump cwl-utils from 0.22 to 0.23

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#61 - Bump cwltool from 3.1.20230127121939 to 3.1.20230201224320

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#60 - Bump black from 22.12.0 to 23.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#59 - Bump docker/build-push-action from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, github_actions

#58 - DO NOT MERGE: Migrate CWL parsing from cwltool to cwl-utils

Pull Request - State: open - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#57 - Avoid Sqlite race conditions during tests

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#56 - Added no regression tests for persistence

Pull Request - State: closed - Opened by LanderOtto over 1 year ago - 1 comment

#55 - Bump cwltool from 3.1.20221201130942 to 3.1.20230127121939

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#54 - Bump cwl-utils from 0.21 to 0.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago
Labels: dependencies, python

#53 - Added nested files to main entity

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#52 - Fixed cwl-runner entrypoint with no workflows entry

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#51 - Better job naming strategy for CWL

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#50 - Fix scheduler validation path

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#49 - Revised setup.py classifiers

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#48 - Bump flake8-bugbear from 23.1.17 to 23.1.20

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#47 - Bump cachetools from 5.2.1 to 5.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#46 - Added extension points to StreamFlowPlugin

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#45 - Workflow Run RO-Crate support

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago - 1 comment

#44 - Bump flake8-bugbear from 22.12.6 to 23.1.17

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#43 - Bump jsonref from 1.0.1 to 1.1.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#42 - Bump flake8-bugbear from 22.12.6 to 23.1.14

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, python

#39 - Added regression test scheduler

Pull Request - State: closed - Opened by LanderOtto over 1 year ago - 1 comment

#16 - Fix cwltool.expression module missing error

Pull Request - State: closed - Opened by panda1100 almost 2 years ago - 3 comments

#15 - cwltool.expression module is missing on cwltool==3.1.20221008225030

Issue - State: closed - Opened by panda1100 almost 2 years ago - 2 comments

#14 - Expose additional optional parameters in SLURM connector (e.g., number of nodes requested)

Issue - State: closed - Opened by paoloviviani about 2 years ago - 2 comments
Labels: enhancement

GitHub / alpha-unito/streamflow issues and pull requests