alpha-unito/streamflow issues and pull requests

#332 - Improved error message of batch systems when job fails

Pull Request - State: closed - Opened by LanderOtto 9 months ago - 1 comment

#331 - Fixed provenance issues

Pull Request - State: closed - Opened by LanderOtto 9 months ago - 1 comment

#330 - Fixed `CWLConditionalStep` persistence

Pull Request - State: closed - Opened by LanderOtto 9 months ago - 1 comment

#329 - Added `StreamWrapper` documentation

Pull Request - State: closed - Opened by GlassOfWhiskey 9 months ago - 1 comment

#328 - Fixed symbolic link remote input data error

Pull Request - State: closed - Opened by LanderOtto 9 months ago - 1 comment

#327 - Added missing task creation in some gathers

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#326 - Fixed typo errors

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 2 comments

#325 - Fixed job name

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#324 - Fixed data location invalidation

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#323 - Fix `valueFrom` type checking behaviour

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago - 1 comment

#322 - Bump asyncssh from 2.14.1 to 2.14.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#321 - Bump psutil from 5.9.6 to 5.9.7

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#320 - Bump bcrypt from 4.1.1 to 4.1.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#319 - Bump actions/download-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: dependencies, github_actions

#318 - Bump actions/upload-artifact from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 2 comments
Labels: dependencies, github_actions

#317 - Bump mukunku/tag-exists-action from 1.4.0 to 1.5.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, github_actions

#316 - Bump github/codeql-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, github_actions

#315 - Bump black from 23.11.0 to 23.12.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#314 - Fixed incomplete stream reading

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#313 - Bump bandit from 1.7.5 to 1.7.6

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#312 - Bump pandas from 2.1.3 to 2.1.4

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#311 - Fixed SSHClientConnection closing

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#310 - Fixed template environment variables

Pull Request - State: closed - Opened by LanderOtto 10 months ago

#309 - Fixed remote-to-local copy of nested directories

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#308 - Adjusted local-to-remote copy with folders

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago

#307 - Bump cwltool from 3.1.20231114134824 to 3.1.20231207110929

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#306 - Bump actions/setup-python from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, github_actions

#305 - Bump importlib-metadata from 6.8.0 to 7.0.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#304 - Bump flake8-bugbear from 23.11.28 to 23.12.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#303 - Bump pytest-asyncio from 0.21.1 to 0.23.2

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#302 - Bump cwl-utils from 0.31 to 0.32

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#301 - Fix copy remote-to-remote using ConnectorWrapper

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#300 - Bump flake8-bugbear from 23.11.26 to 23.11.28

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#299 - Bump bcrypt from 4.0.1 to 4.1.1

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#298 - Bump sphinx-rtd-theme from 1.3.0 to 2.0.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#297 - Bump flake8-bugbear from 23.9.16 to 23.11.26

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#296 - Bump aiohttp from 3.9.0 to 3.9.1

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies, python

#295 - Add `optional` param to composite processors

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago - 1 comment

#294 - Add warning messages for default connector params

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago - 1 comment

#293 - Improve `test_download` logic

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago - 1 comment

#292 - Replace `cgi` and `logging.warn` with new APIs

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago - 1 comment

#291 - Removed deprecated `pkg_resources` API

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago - 1 comment

#290 - Fixed loop termination combinator persistence

Pull Request - State: closed - Opened by LanderOtto 10 months ago

#289 - Fixed Config persistence

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#288 - Update CWL v1.2 conformance tests

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago - 1 comment

#287 - Refactor conftest.py

Pull Request - State: closed - Opened by LanderOtto 10 months ago - 1 comment

#286 - Update Node.js version in CI pipeline

Pull Request - State: closed - Opened by GlassOfWhiskey 10 months ago

#285 - Bump pytest-xdist from 3.4.0 to 3.5.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago
Labels: dependencies, python

#284 - Bump kubernetes-asyncio from 28.2.0 to 28.2.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#283 - Bump aiohttp from 3.8.6 to 3.9.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#282 - Bump jsonschema from 4.19.2 to 4.20.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#281 - Bump cwltool from 3.1.20231020140205 to 3.1.20231114134824

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#280 - Bump pandas from 2.1.2 to 2.1.3

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#279 - Bump cwl-utils from 0.30 to 0.31

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#278 - Bump pytest-xdist from 3.3.1 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#277 - Bump asyncssh from 2.14.0 to 2.14.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#276 - Fixed minor issue with port-targets documentation

Pull Request - State: closed - Opened by paoloviviani 11 months ago

#275 - Bump black from 23.10.1 to 23.11.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#274 - Added possibility to load ports and steps in a different workflow

Pull Request - State: closed - Opened by LanderOtto 11 months ago - 2 comments

#273 - Bump cwltest from 2.3.20230825125225 to 2.4.20231031143732

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#272 - Bump pytest-asyncio from 0.21.1 to 0.22.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#271 - Bump cwl-utils from 0.29 to 0.30

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#270 - Bump jsonschema from 4.19.1 to 4.19.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#269 - Bump pandas from 2.1.1 to 2.1.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#268 - Bump yattag from 1.15.1 to 1.15.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#267 - Bump plotly from 5.17.0 to 5.18.0

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#266 - Bump pytest from 7.4.2 to 7.4.3

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#265 - Bump cachetools from 5.3.1 to 5.3.2

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#264 - Bump black from 23.10.0 to 23.10.1

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago - 1 comment
Labels: dependencies, python

#263 - Bump actions/setup-node from 3 to 4

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, github_actions

#262 - Bump cwltool from 3.1.20231016170136 to 3.1.20231020140205

Pull Request - State: closed - Opened by dependabot[bot] 11 months ago
Labels: dependencies, python

#261 - Bump cwltool from 3.1.20231016170136 to 3.1.20231020113452

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, python

#260 - Bump black from 23.9.1 to 23.10.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, python

#259 - Bump cwltool from 3.1.20230906142556 to 3.1.20231016170136

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, python

#258 - Bump psutil from 5.9.5 to 5.9.6

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, python

#257 - Bump pyupgrade from 3.14.0 to 3.15.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#256 - Add support for Python 3.12

Pull Request - State: closed - Opened by GlassOfWhiskey 12 months ago

#255 - Bump aiohttp from 3.8.5 to 3.8.6

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, python

#254 - Bump kubernetes-asyncio from 27.6.0 to 28.2.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#253 - Fix _get_existing_parent behaviour

Pull Request - State: closed - Opened by GlassOfWhiskey 12 months ago - 1 comment

#252 - Bump codespell from 2.2.5 to 2.2.6

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago - 1 comment
Labels: dependencies, python

#251 - Bump pyupgrade from 3.13.0 to 3.14.0

Pull Request - State: closed - Opened by dependabot[bot] 12 months ago
Labels: dependencies, python

#250 - Bump asyncssh from 2.13.2 to 2.14.0

Pull Request - State: closed - Opened by dependabot[bot] almost 1 year ago - 1 comment
Labels: dependencies, python

#249 - Bump kubernetes-asyncio from 26.9.0 to 27.6.0

Pull Request - State: closed - Opened by dependabot[bot] almost 1 year ago
Labels: dependencies, python

#248 - Bump pyupgrade from 3.12.0 to 3.13.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#247 - Bump kubernetes-asyncio from 25.11.0 to 26.9.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#246 - Bump pyupgrade from 3.10.1 to 3.12.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#245 - Bump pandas from 2.1.0 to 2.1.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#244 - Bump jsonschema from 4.19.0 to 4.19.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#243 - Bump pyupgrade from 3.10.1 to 3.11.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#242 - Bump mukunku/tag-exists-action from 1.3.0 to 1.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#241 - Bump pyupgrade from 3.10.1 to 3.11.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#240 - Bump plotly from 5.16.1 to 5.17.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#239 - Bump flake8-bugbear from 23.7.10 to 23.9.16

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#238 - Bump sphinx from 7.2.5 to 7.2.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#237 - Bump docker/build-push-action from 4 to 5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#236 - Bump docker/setup-buildx-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#235 - Bump docker/login-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#234 - Bump docker/setup-qemu-action from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#233 - Bump black from 23.7.0 to 23.9.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

GitHub / alpha-unito/streamflow issues and pull requests