Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / alleninstitute/scrattch.taxonomy issues and pull requests

#43 - Inkar anndata path fix

Pull Request - State: closed - Opened by inkarkapen 15 days ago

#42 - MapMyCells bug in branch njj-major-update

Issue - State: open - Opened by UCDNJJ 16 days ago

#40 - AIT Validation

Issue - State: open - Opened by UCDNJJ 16 days ago

#37 - segfault with docker & buildtaxonomy

Issue - State: open - Opened by Yves33 30 days ago - 1 comment

#36 - Add cell_type_mapper implementation of correlation mapping

Issue - State: open - Opened by jeremymiller about 2 months ago - 2 comments

#35 - Updates to improve/fix correlation mapping

Pull Request - State: closed - Opened by jeremymiller about 2 months ago - 1 comment

#34 - Additional TO DO items

Issue - State: open - Opened by jeremymiller 3 months ago - 3 comments

#34 - Additional TO DO items

Issue - State: open - Opened by jeremymiller 3 months ago - 3 comments

#33 - Updates to fix mappings and dendrogram input

Pull Request - State: closed - Opened by jeremymiller 3 months ago

#33 - Updates to fix mappings and dendrogram input

Pull Request - State: closed - Opened by jeremymiller 3 months ago

#32 - Inkar mode fix

Pull Request - State: closed - Opened by inkarkapen 3 months ago

#32 - Inkar mode fix

Pull Request - State: closed - Opened by inkarkapen 3 months ago

#31 - Update createShiny.R to work with Sifter

Pull Request - State: closed - Opened by jeremymiller 4 months ago

#31 - Update createShiny.R to work with Sifter

Pull Request - State: closed - Opened by jeremymiller 4 months ago

#30 - "BN LAMP5" is "CGE GABA" or "MGE GABA"?

Issue - State: closed - Opened by DingWB 4 months ago - 1 comment

#30 - "BN LAMP5" is "CGE GABA" or "MGE GABA"?

Issue - State: closed - Opened by DingWB 4 months ago - 1 comment

#29 - Questions about the HMBA_Human_BG_annotation

Issue - State: closed - Opened by DingWB 5 months ago - 11 comments

#29 - Questions about the HMBA_Human_BG_annotation

Issue - State: closed - Opened by DingWB 5 months ago - 11 comments

#28 - Some Excitatory neuron subtypes are missing in cell type taxonomy?

Issue - State: closed - Opened by DingWB 5 months ago - 7 comments

#28 - Some Excitatory neuron subtypes are missing in cell type taxonomy?

Issue - State: closed - Opened by DingWB 5 months ago - 7 comments

#27 - Inkar mapmycells comments

Pull Request - State: closed - Opened by inkarkapen 5 months ago - 1 comment

#27 - Inkar mapmycells comments

Pull Request - State: closed - Opened by inkarkapen 5 months ago - 1 comment

#26 - updated docker version

Pull Request - State: closed - Opened by inkarkapen 6 months ago

#26 - updated docker version

Pull Request - State: closed - Opened by inkarkapen 6 months ago

#25 - added the capability to specify a log file path

Pull Request - State: closed - Opened by zrlewis 6 months ago - 1 comment

#25 - added the capability to specify a log file path

Pull Request - State: closed - Opened by zrlewis 6 months ago - 1 comment

#24 - python set up update in zzz

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#24 - python set up update in zzz

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#23 - updated readme

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#23 - updated readme

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#22 - updated docker

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#22 - updated docker

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#21 - updated tutorial and fixed list error

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#21 - updated tutorial and fixed list error

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#20 - Refactored and added option for user provided files

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#20 - Refactored and added option for user provided files

Pull Request - State: closed - Opened by inkarkapen 7 months ago

#19 - Update aligned_schema.md

Pull Request - State: closed - Opened by dosumis 7 months ago

#18 - Adding mapmycells (build taxonomy)

Pull Request - State: closed - Opened by inkarkapen 8 months ago

#18 - Adding mapmycells (build taxonomy)

Pull Request - State: closed - Opened by inkarkapen 8 months ago

#17 - Issue with addDendrogramMarkers()

Issue - State: closed - Opened by xuehanci 9 months ago - 2 comments

#17 - Issue with addDendrogramMarkers()

Issue - State: closed - Opened by xuehanci 9 months ago - 2 comments

#16 - Inkar cell type mapper tutorial python

Pull Request - State: closed - Opened by inkarkapen 9 months ago

#16 - Inkar cell type mapper tutorial python

Pull Request - State: closed - Opened by inkarkapen 9 months ago

#15 - Adding customized dendrogram in buildPatchseqTaxonomy()

Issue - State: open - Opened by xuehanci 10 months ago - 2 comments

#15 - Adding customized dendrogram in buildPatchseqTaxonomy()

Issue - State: open - Opened by xuehanci 10 months ago - 2 comments

#14 - Major scrattch.taxonomy update - KL divergence

Pull Request - State: closed - Opened by jeremymiller 11 months ago

#14 - Major scrattch.taxonomy update - KL divergence

Pull Request - State: closed - Opened by jeremymiller 11 months ago

#12 - Save all original cells in uns.cellSet

Pull Request - State: closed - Opened by xuehanci 11 months ago

#12 - Save all original cells in uns.cellSet

Pull Request - State: closed - Opened by xuehanci 11 months ago

#11 - (Non-breaking) issues with loadTaxonomy and checkTaxonomy

Issue - State: open - Opened by jeremymiller 12 months ago - 1 comment
Labels: bug, easy

#11 - (Non-breaking) issues with loadTaxonomy and checkTaxonomy

Issue - State: open - Opened by jeremymiller 12 months ago - 1 comment
Labels: bug, easy

#10 - Extend AIT format to hold HANN (python) files

Issue - State: closed - Opened by UCDNJJ about 1 year ago

#9 - Automated taxonomy standards report from AIT format.

Issue - State: closed - Opened by UCDNJJ about 1 year ago

#9 - Automated taxonomy standards report from AIT format.

Issue - State: closed - Opened by UCDNJJ about 1 year ago

#8 - Fix AWS links for public taxonomies - Nelson / Jeremy / Inkar

Issue - State: closed - Opened by UCDNJJ about 1 year ago

#7 - PatchSeq tutorial updates.

Issue - State: closed - Opened by UCDNJJ about 1 year ago

#6 - Integrate new taxonomy standards into anndata `.uns`

Issue - State: closed - Opened by UCDNJJ about 1 year ago
Labels: easy

#5 - Record in `.uns` all cell identifiers.

Issue - State: closed - Opened by UCDNJJ about 1 year ago
Labels: good first issue, easy

#4 - Inkar add hodge dataset

Pull Request - State: closed - Opened by ikapen-alleninst about 1 year ago

#2 - added a check in buildTaxonomy.R to look for "sample" column name

Pull Request - State: closed - Opened by ikapen-alleninst over 1 year ago - 1 comment

#1 - Merge windows file path (and other changes) into dev

Pull Request - State: closed - Opened by jeremymiller over 1 year ago