alleninstitute/scrattch.hicat issues and pull requests

#36 - run_consensus_clust missing return.markers = TRUE setting

Issue - State: open - Opened by tebakken almost 6 years ago

#36 - run_consensus_clust missing return.markers = TRUE setting

Issue - State: open - Opened by tebakken almost 6 years ago

#35 - Dev

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#35 - Dev

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#34 - Testing/de.genes

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#34 - Testing/de.genes

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#33 - Testing/vg

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#33 - Testing/vg

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#32 - Testing/util

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#32 - Testing/util

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#31 - Testing/annotate

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#31 - Testing/annotate

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#30 - Testing/annotate

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#29 - Adding a test skeleton for EVERY FUNCTION

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#29 - Adding a test skeleton for EVERY FUNCTION

Pull Request - State: closed - Opened by hypercompetent almost 6 years ago

#28 - Added tests for check_qc function

Pull Request - State: closed - Opened by adrisede almost 6 years ago

#28 - Added tests for check_qc function

Pull Request - State: closed - Opened by adrisede almost 6 years ago

#27 - Adding heatmap4

Pull Request - State: closed - Opened by adrisede almost 6 years ago

#27 - Adding heatmap4

Pull Request - State: closed - Opened by adrisede almost 6 years ago

#26 - Update vignette to work with new tasic2016data

Pull Request - State: closed - Opened by eturkes almost 6 years ago - 2 comments

#26 - Update vignette to work with new tasic2016data

Pull Request - State: closed - Opened by eturkes almost 6 years ago - 2 comments

#25 - fast_tsne.R breaks installation of dev branch

Issue - State: closed - Opened by tebakken almost 6 years ago - 1 comment

#25 - fast_tsne.R breaks installation of dev branch

Issue - State: closed - Opened by tebakken almost 6 years ago - 1 comment

#24 - Added get_cl_prop() for calculating proportions for sparse matrices, …

Pull Request - State: closed - Opened by hypercompetent about 6 years ago

#23 - Fix a bug in group_specific_markers(): length(g > 0) to length(g) > 0

Pull Request - State: closed - Opened by hypercompetent about 6 years ago - 1 comment

#22 - Merge clusters based on number of marker genes regardless of de.score

Issue - State: closed - Opened by tebakken about 6 years ago - 1 comment
Labels: enhancement

#21 - Update column names for tutorial

Issue - State: closed - Opened by apblair about 6 years ago - 1 comment
Labels: bug

#20 - Refactor of the findVG function for readability

Pull Request - State: closed - Opened by hypercompetent over 6 years ago
Labels: enhancement

#19 - Split findVG to computation and plots

Issue - State: open - Opened by hypercompetent over 6 years ago
Labels: enhancement

#18 - Dev

Pull Request - State: closed - Opened by jeremymiller over 6 years ago

#17 - Jeremy

Pull Request - State: closed - Opened by jeremymiller over 6 years ago

#16 - Feature/test

Pull Request - State: closed - Opened by SarojaSomu over 6 years ago

#15 - Some cleaning and small correction in computing the g.vars, now g.var…

Pull Request - State: open - Opened by Fahimeh1983 over 6 years ago

#14 - Fixed a bug in CPM function for dgTmatrix and add the unit test for C…

Pull Request - State: closed - Opened by Fahimeh1983 over 6 years ago

#13 - Add cluster_cv.R

Pull Request - State: closed - Opened by adrisede over 6 years ago

#12 - Added 5 human functions with description pages

Pull Request - State: closed - Opened by SarojaSomu over 6 years ago

#11 - Fix bug in the previous test and include a new test

Pull Request - State: closed - Opened by Fahimeh1983 over 6 years ago

#10 - Adding unit test for get_pair_matrix in utils

Pull Request - State: closed - Opened by Fahimeh1983 over 6 years ago

#9 - Zy

Pull Request - State: closed - Opened by yzizhen over 6 years ago - 2 comments

#8 - Addition of functions for checking whether clusters are outliers or donor-specific

Issue - State: open - Opened by SarojaSomu over 6 years ago

#7 - Docs: Workflow of functions

Issue - State: open - Opened by hypercompetent over 6 years ago
Labels: documentation

#6 - Multicore clustering should allow user defined .libPath

Issue - State: closed - Opened by tebakken over 6 years ago - 1 comment
Labels: bug

#5 - Clustering should be able to run without writing files

Issue - State: open - Opened by hypercompetent over 6 years ago
Labels: enhancement

#4 - Verbosity needs to be adjustable

Issue - State: open - Opened by hypercompetent over 6 years ago
Labels: enhancement

#3 - iter_clust() throws an hclust warning in WGCNA mode

Issue - State: closed - Opened by hypercompetent over 6 years ago - 1 comment
Labels: bug

#2 - iter_clust() and iter_consensus_clust() have an if statement glitch

Issue - State: closed - Opened by hypercompetent over 6 years ago - 1 comment
Labels: bug

#1 - library() order matters

Issue - State: closed - Opened by hypercompetent over 6 years ago - 1 comment

GitHub / alleninstitute/scrattch.hicat issues and pull requests