Ecosyste.ms: Issues
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GitHub / alleninstitute/sciduck issues and pull requests
#17 - Add an sd method that computes the fraction of keeper vs. tossed cells based on uns tracking.
Issue -
State: open - Opened by UCDNJJ 8 days ago
#15 - When adding a constraint that fails, remove it from constraint records.
Issue -
State: closed - Opened by UCDNJJ 3 months ago
- 1 comment
#14 - Update README.md
Pull Request -
State: closed - Opened by UCDNJJ 3 months ago
#13 - Update README.md
Pull Request -
State: closed - Opened by UCDNJJ 4 months ago
#12 - add in a plotting function
Pull Request -
State: closed - Opened by dyuan1111 4 months ago
#11 - Modify module names to follow scanpy via init.py. sciduck.qc, sciduck.metrics, sciduck.anno, sciduck.pl.
Issue -
State: closed - Opened by UCDNJJ 5 months ago
#10 - Templates for constraints.
Issue -
State: closed - Opened by UCDNJJ 5 months ago
#9 - rework basic_qc based on generic constraint model
Pull Request -
State: closed - Opened by mtvector 5 months ago
- 3 comments
#8 - Recording in anndata.uns cell_sets (list of cell ids) filtered for each metric - threshold pair.
Issue -
State: open - Opened by UCDNJJ 5 months ago
#7 - Recording in anndata.uns the quality control metrics and thresholds used.
Issue -
State: closed - Opened by UCDNJJ 5 months ago
#6 - Basic schema for how we will store quality control logic in uns.
Issue -
State: closed - Opened by UCDNJJ 5 months ago
#5 - Finalize annotation table python functions.
Issue -
State: open - Opened by UCDNJJ 5 months ago
#4 - Finalize cluster centric QC.
Issue -
State: closed - Opened by UCDNJJ 5 months ago
#3 - Finalize foundation for basic QC.
Issue -
State: closed - Opened by UCDNJJ 5 months ago
#2 - !ROADMAP!
Issue -
State: open - Opened by UCDNJJ 5 months ago
#1 - Visualization of quality metrics to show prior to filtering.
Issue -
State: open - Opened by UCDNJJ 5 months ago
- 1 comment
Labels: enhancement