alleninstitute/datacube issues and pull requests

#100 - editable and multi-version do not work well together in pip

Pull Request - State: closed - Opened by chrisbarber over 6 years ago

#100 - editable and multi-version do not work well together in pip

Pull Request - State: closed - Opened by chrisbarber over 6 years ago

#99 - human MTG transcriptomics service

Issue - State: closed - Opened by dyf over 6 years ago - 7 comments
Labels: p2, epic

#99 - human MTG transcriptomics service

Issue - State: closed - Opened by dyf over 6 years ago - 7 comments
Labels: p2, epic

#98 - move conn bridge into web resource and improve logging

Pull Request - State: closed - Opened by chrisbarber over 6 years ago - 3 comments

#98 - move conn bridge into web resource and improve logging

Pull Request - State: closed - Opened by chrisbarber over 6 years ago - 3 comments

#97 - investigate why many file handles are open in production, fix if necessary

Issue - State: closed - Opened by dyf over 6 years ago - 1 comment

#97 - investigate why many file handles are open in production, fix if necessary

Issue - State: closed - Opened by dyf over 6 years ago - 1 comment

#96 - projection data returned "NaN" from latest deployment including latest data refresh

Issue - State: closed - Opened by shus2018 over 6 years ago - 3 comments

#96 - projection data returned "NaN" from latest deployment including latest data refresh

Issue - State: closed - Opened by shus2018 over 6 years ago - 3 comments

#95 - consider update allensdk version to 0.14.5

Issue - State: closed - Opened by shus2018 over 6 years ago - 1 comment

#95 - consider update allensdk version to 0.14.5

Issue - State: closed - Opened by shus2018 over 6 years ago - 1 comment

#94 - fix double-logging from conn bridge, remove unnecessary inlinecallbacks

Pull Request - State: closed - Opened by chrisbarber over 6 years ago

#94 - fix double-logging from conn bridge, remove unnecessary inlinecallbacks

Pull Request - State: closed - Opened by chrisbarber over 6 years ago

#93 - use python unbuffered for logging and cgi

Pull Request - State: closed - Opened by chrisbarber over 6 years ago - 1 comment

#93 - use python unbuffered for logging and cgi

Pull Request - State: closed - Opened by chrisbarber over 6 years ago - 1 comment

#92 - enable auto reconnect

Pull Request - State: closed - Opened by NileGraddis over 6 years ago

#92 - enable auto reconnect

Pull Request - State: closed - Opened by NileGraddis over 6 years ago

#91 - dev and test environment needs warehouse port configuration

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#91 - dev and test environment needs warehouse port configuration

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#90 - clean up or templatize crossbar configs

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#90 - clean up or templatize crossbar configs

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#89 - configure websocket client autoping to serve as tcp keep alive

Issue - State: closed - Opened by chrisbarber over 6 years ago - 2 comments

#89 - configure websocket client autoping to serve as tcp keep alive

Issue - State: closed - Opened by chrisbarber over 6 years ago - 2 comments

#88 - investigate 5min timeout, see if it can be turned off

Issue - State: closed - Opened by dyf over 6 years ago - 1 comment

#88 - investigate 5min timeout, see if it can be turned off

Issue - State: closed - Opened by dyf over 6 years ago - 1 comment

#87 - use xrelease/deploy_datacube.yml on tdatacube for consistency across environments

Issue - State: open - Opened by chrisbarber over 6 years ago - 2 comments
Labels: p2, deployment

#87 - use xrelease/deploy_datacube.yml on tdatacube for consistency across environments

Issue - State: open - Opened by chrisbarber over 6 years ago - 2 comments
Labels: p2, deployment

#86 - run bamboo build agent and datacube deployment as appropriate user on devdatacube

Issue - State: open - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#86 - run bamboo build agent and datacube deployment as appropriate user on devdatacube

Issue - State: open - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#85 - AWS lambda backend for searches or other reduced RAM solution

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: experimental

#84 - Healthcheck at /cgi/apptest.py generates stack trace when requested by simple client

Issue - State: closed - Opened by byoungstrom over 6 years ago - 3 comments

#84 - Healthcheck at /cgi/apptest.py generates stack trace when requested by simple client

Issue - State: closed - Opened by byoungstrom over 6 years ago - 3 comments

#83 - remove relatively useless thread pool stats logging from datacube

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#83 - remove relatively useless thread pool stats logging from datacube

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#82 - implement log cleanup

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: p2, deployment

#81 - implement exponential backoff in `loop.sh` and `run.sh` scripts

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: deployment

#81 - implement exponential backoff in `loop.sh` and `run.sh` scripts

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: deployment

#80 - deprecate special `filter_cell_specimens` in favor of `raw`

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: app-integration

#80 - deprecate special `filter_cell_specimens` in favor of `raw`

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: app-integration

#79 - should exclude "pixel = None for len() check in preprare_file

Issue - State: open - Opened by shus2018 over 6 years ago

#79 - should exclude "pixel = None for len() check in preprare_file

Issue - State: open - Opened by shus2018 over 6 years ago

#78 - more efficient payload format for streamlines

Issue - State: open - Opened by chrisbarber over 6 years ago - 1 comment
Labels: p3, app-integration

#77 - split up correlation filters into `filters` and `mask`

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: app-integration, core

#77 - split up correlation filters into `filters` and `mask`

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: app-integration, core

#76 - align masks prior to ANDing in `mask_field`

Issue - State: closed - Opened by chrisbarber over 6 years ago
Labels: core

#75 - force inclusion of seed in correlation search filters

Pull Request - State: closed - Opened by chrisbarber over 6 years ago - 6 comments

#75 - force inclusion of seed in correlation search filters

Pull Request - State: closed - Opened by chrisbarber over 6 years ago - 6 comments

#74 - prevent pipenv from accumulating files in tmp/

Issue - State: open - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#74 - prevent pipenv from accumulating files in tmp/

Issue - State: open - Opened by chrisbarber over 6 years ago - 1 comment
Labels: deployment

#73 - rename services/pandas/ to services/datacube/

Issue - State: closed - Opened by chrisbarber over 6 years ago - 2 comments
Labels: cosmetic

#73 - rename services/pandas/ to services/datacube/

Issue - State: closed - Opened by chrisbarber over 6 years ago - 2 comments
Labels: cosmetic

#72 - move legacy_conn_routes into services/

Issue - State: closed - Opened by chrisbarber over 6 years ago - 2 comments
Labels: cosmetic

#72 - move legacy_conn_routes into services/

Issue - State: closed - Opened by chrisbarber over 6 years ago - 2 comments
Labels: cosmetic

#71 - move to pipenv for all services

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment

#71 - move to pipenv for all services

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment

#70 - create status/ page which consolidates individual status calls

Issue - State: open - Opened by chrisbarber over 6 years ago - 2 comments
Labels: deployment

#70 - create status/ page which consolidates individual status calls

Issue - State: open - Opened by chrisbarber over 6 years ago - 2 comments
Labels: deployment

#69 - rows, num_rows and sort_order not working(different from current prod) for conn correlation search

Issue - State: open - Opened by shus2018 over 6 years ago - 3 comments

#69 - rows, num_rows and sort_order not working(different from current prod) for conn correlation search

Issue - State: open - Opened by shus2018 over 6 years ago - 3 comments

#68 - incorrect mouse_ccf (possible other service as well) call can crash datacube server

Issue - State: closed - Opened by shus2018 over 6 years ago - 6 comments

#68 - incorrect mouse_ccf (possible other service as well) call can crash datacube server

Issue - State: closed - Opened by shus2018 over 6 years ago - 6 comments

#67 - implement sort on datacube `raw` call

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: core

#67 - implement sort on datacube `raw` call

Issue - State: closed - Opened by chrisbarber over 6 years ago - 1 comment
Labels: core

#66 - integrate differential search and fold change query

Issue - State: open - Opened by chrisbarber over 6 years ago - 1 comment
Labels: core

#66 - integrate differential search and fold change query

Issue - State: open - Opened by chrisbarber over 6 years ago - 1 comment
Labels: core

#65 - shuffle correlation query

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#64 - mouseconn data/health check incorrect

Issue - State: closed - Opened by shus2018 over 6 years ago - 4 comments

#64 - mouseconn data/health check incorrect

Issue - State: closed - Opened by shus2018 over 6 years ago - 4 comments

#63 - report missing field names

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 2 comments

#63 - report missing field names

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 2 comments

#62 - API, data, and build versioning

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: deployment

#62 - API, data, and build versioning

Issue - State: open - Opened by chrisbarber over 6 years ago
Labels: deployment

#61 - datacube undefined field error should include field name(s)

Issue - State: closed - Opened by chrisbarber over 6 years ago
Labels: good first issue

#61 - datacube undefined field error should include field name(s)

Issue - State: closed - Opened by chrisbarber over 6 years ago
Labels: good first issue

#60 - implement auto restart for conn bridge

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#59 - legacy_conn_routes timeouts on wamp calls

Issue - State: open - Opened by chrisbarber over 6 years ago - 3 comments
Labels: deployment

#59 - legacy_conn_routes timeouts on wamp calls

Issue - State: open - Opened by chrisbarber over 6 years ago - 3 comments
Labels: deployment

#58 - possible legacy bridge crash/transportlost

Issue - State: closed - Opened by shus2018 over 6 years ago - 34 comments

#58 - possible legacy bridge crash/transportlost

Issue - State: closed - Opened by shus2018 over 6 years ago - 34 comments

#57 - split conn bridge run into two commands

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#57 - split conn bridge run into two commands

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#56 - error out on extraneous parameters in datasets json files

Issue - State: open - Opened by chrisbarber over 6 years ago - 7 comments

#56 - error out on extraneous parameters in datasets json files

Issue - State: open - Opened by chrisbarber over 6 years ago - 7 comments

#55 - nice to validate experiment IDs exist before call "get_seed" method for datacube.corr.connectivity

Issue - State: closed - Opened by shus2018 over 6 years ago - 12 comments

#55 - nice to validate experiment IDs exist before call "get_seed" method for datacube.corr.connectivity

Issue - State: closed - Opened by shus2018 over 6 years ago - 12 comments

#54 - add option for running conn bridge without pipenv

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#54 - add option for running conn bridge without pipenv

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#53 - can't auto-start legacy-conn-route

Issue - State: closed - Opened by shus2018 over 6 years ago - 15 comments

#53 - can't auto-start legacy-conn-route

Issue - State: closed - Opened by shus2018 over 6 years ago - 15 comments

#52 - 50/domain

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#52 - 50/domain

Pull Request - State: closed - Opened by NileGraddis over 6 years ago - 1 comment

#51 - target_domain: builtins.ValueError: invalid literal for int() with base 10: 'R:VIS'

Issue - State: closed - Opened by shus2018 over 6 years ago

#51 - target_domain: builtins.ValueError: invalid literal for int() with base 10: 'R:VIS'

Issue - State: closed - Opened by shus2018 over 6 years ago

#50 - service::mouse_connectivity_injection_coordinate should output "structure-name" field in case regression

Issue - State: closed - Opened by shus2018 over 6 years ago - 3 comments

#50 - service::mouse_connectivity_injection_coordinate should output "structure-name" field in case regression

Issue - State: closed - Opened by shus2018 over 6 years ago - 3 comments

#49 - unexpected keyword argument 'injection_domain_threshold'

Issue - State: closed - Opened by shus2018 over 6 years ago - 2 comments

#49 - unexpected keyword argument 'injection_domain_threshold'

Issue - State: closed - Opened by shus2018 over 6 years ago - 2 comments

#48 - datacube conn server from build#205 starting/loading time taking longer than #204

Issue - State: closed - Opened by shus2018 over 6 years ago - 3 comments

#48 - datacube conn server from build#205 starting/loading time taking longer than #204

Issue - State: closed - Opened by shus2018 over 6 years ago - 3 comments

GitHub / alleninstitute/datacube issues and pull requests