Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / alleninstitute/brain_observatory_qc issues and pull requests

#100 - Add from lims functions

Pull Request - State: closed - Opened by DowntonCrabby about 2 years ago

#100 - Add from lims functions

Pull Request - State: closed - Opened by DowntonCrabby about 2 years ago

#99 - added run oasis script

Pull Request - State: closed - Opened by mattjdavis about 2 years ago

#99 - added run oasis script

Pull Request - State: closed - Opened by mattjdavis about 2 years ago

#98 - Function to calculate frame rate

Issue - State: closed - Opened by jkim0731 about 2 years ago - 1 comment
Labels: issue type: feature request

#98 - Function to calculate frame rate

Issue - State: closed - Opened by jkim0731 about 2 years ago - 1 comment
Labels: issue type: feature request

#97 - added metadata frame_rate correction

Pull Request - State: closed - Opened by mattjdavis about 2 years ago

#97 - added metadata frame_rate correction

Pull Request - State: closed - Opened by mattjdavis about 2 years ago

#96 - New experiment class

Pull Request - State: closed - Opened by mattjdavis about 2 years ago

#95 - Update from lims utilities

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago - 1 comment

#95 - Update from lims utilities

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago - 1 comment

#94 - Cortical_z_stacks Well Known File Type

Issue - State: closed - Opened by cbrrrry over 2 years ago - 1 comment
Labels: issue type: feature request

#94 - Cortical_z_stacks Well Known File Type

Issue - State: closed - Opened by cbrrrry over 2 years ago - 1 comment
Labels: issue type: feature request

#93 - Cell health & basic physiology characterization

Issue - State: closed - Opened by matchings over 2 years ago - 1 comment

#93 - Cell health & basic physiology characterization

Issue - State: closed - Opened by matchings over 2 years ago - 1 comment

#92 - get_general_info_for_id not working in HPC

Issue - State: closed - Opened by jkim0731 over 2 years ago - 14 comments

#91 - Missing or inaccessable data.

Issue - State: closed - Opened by morriscb over 2 years ago - 1 comment
Labels: issue type: QC Issue

#90 - Reprocessing LAMF experiments with novel MC params

Issue - State: closed - Opened by mattjdavis over 2 years ago - 1 comment
Labels: issue type: QC Issue

#90 - Reprocessing LAMF experiments with novel MC params

Issue - State: closed - Opened by mattjdavis over 2 years ago - 1 comment
Labels: issue type: QC Issue

#89 - from_lims.get_ophys_experiments_table not working as expected

Issue - State: open - Opened by matchings over 2 years ago - 2 comments

#89 - from_lims.get_ophys_experiments_table not working as expected

Issue - State: open - Opened by matchings over 2 years ago - 2 comments

#88 - Missing Sync Fail tags

Issue - State: closed - Opened by samiamseid over 2 years ago - 4 comments
Labels: software: mouse-seeks, issue type: metric update

#88 - Missing Sync Fail tags

Issue - State: closed - Opened by samiamseid over 2 years ago - 4 comments
Labels: software: mouse-seeks, issue type: metric update

#87 - Mouse-seeks mTrain stage selection not working

Issue - State: open - Opened by samiamseid over 2 years ago - 2 comments

#87 - Mouse-seeks mTrain stage selection not working

Issue - State: open - Opened by samiamseid over 2 years ago - 2 comments

#86 - Buildout from network

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#86 - Buildout from network

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#85 - Fix lint

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#85 - Fix lint

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#84 - Fix lint

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#84 - Fix lint

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#83 - Fix lint

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#83 - Fix lint

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#82 - Fix dependencies

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#82 - Fix dependencies

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#81 - add pytest.ini to mark local-only tests

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#81 - add pytest.ini to mark local-only tests

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#80 - Add pytest ini

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#80 - Add pytest ini

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#79 - fix package name

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#79 - fix package name

Pull Request - State: closed - Opened by seanmcculloch over 2 years ago

#78 - Buildout repo structure

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#78 - Buildout repo structure

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#77 - added snr utility

Pull Request - State: open - Opened by mattjdavis over 2 years ago

#77 - added snr utility

Pull Request - State: open - Opened by mattjdavis over 2 years ago

#76 - Duplicate experiment ids in LearningMFish project

Issue - State: open - Opened by mattjdavis over 2 years ago - 1 comment

#76 - Duplicate experiment ids in LearningMFish project

Issue - State: open - Opened by mattjdavis over 2 years ago - 1 comment

#75 - merge update_from_lims with main

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#75 - merge update_from_lims with main

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#74 - Upper and lower plane data swapped in ophys session 1154460714

Issue - State: closed - Opened by jkim0731 over 2 years ago - 1 comment

#73 - LAMF ophys motion corrected h5 file show extensive uncorrected motion

Issue - State: closed - Opened by mattjdavis over 2 years ago - 32 comments
Labels: issue type: QC Issue

#73 - LAMF ophys motion corrected h5 file show extensive uncorrected motion

Issue - State: closed - Opened by mattjdavis over 2 years ago - 32 comments
Labels: issue type: QC Issue

#72 - added roi.py

Pull Request - State: closed - Opened by mattjdavis over 2 years ago

#72 - added roi.py

Pull Request - State: closed - Opened by mattjdavis over 2 years ago

#71 - Implement QC process for looking at raw/MC movies

Issue - State: open - Opened by mattjdavis over 2 years ago - 2 comments
Labels: issue type: feature request

#71 - Implement QC process for looking at raw/MC movies

Issue - State: open - Opened by mattjdavis over 2 years ago - 2 comments
Labels: issue type: feature request

#70 - MESO.1 Display lag >1 second

Issue - State: closed - Opened by samiamseid over 2 years ago - 2 comments
Labels: issue type: QC Issue

#70 - MESO.1 Display lag >1 second

Issue - State: closed - Opened by samiamseid over 2 years ago - 2 comments
Labels: issue type: QC Issue

#69 - Update from lims

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#69 - Update from lims

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#68 - Remove database

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#68 - Remove database

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#67 - Intensity Plot Calculation Update Needed

Issue - State: open - Opened by samiamseid over 2 years ago - 3 comments
Labels: issue type: metric update

#67 - Intensity Plot Calculation Update Needed

Issue - State: open - Opened by samiamseid over 2 years ago - 3 comments
Labels: issue type: metric update

#66 - Missing MVR Sync Lines: Salvaging Sessions

Issue - State: closed - Opened by samiamseid over 2 years ago - 5 comments
Labels: issue type: information &/or decision

#66 - Missing MVR Sync Lines: Salvaging Sessions

Issue - State: closed - Opened by samiamseid over 2 years ago - 5 comments
Labels: issue type: information &/or decision

#65 - VipAxonal physio dropped frames update

Issue - State: closed - Opened by samiamseid over 2 years ago - 4 comments
Labels: issue type: metric update

#65 - VipAxonal physio dropped frames update

Issue - State: closed - Opened by samiamseid over 2 years ago - 4 comments
Labels: issue type: metric update

#64 - Update data access architecture

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#64 - Update data access architecture

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#63 - Line artifact in ophys movies

Issue - State: open - Opened by mattjdavis over 2 years ago - 8 comments
Labels: issue type: QC Issue

#62 - Data access updates needed for developing data processing qc

Issue - State: closed - Opened by DowntonCrabby over 2 years ago - 1 comment
Labels: issue type: feature request, Project: Learning mFish, Data access issue

#62 - Data access updates needed for developing data processing qc

Issue - State: closed - Opened by DowntonCrabby over 2 years ago - 1 comment
Labels: issue type: feature request, Project: Learning mFish, Data access issue

#61 - Update setup

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#61 - Update setup

Pull Request - State: closed - Opened by DowntonCrabby over 2 years ago

#60 - suite2p segmentation validation

Issue - State: closed - Opened by matchings over 2 years ago - 1 comment
Labels: issue type: feature request

#59 - quantifying FOV matching across sessions

Issue - State: open - Opened by matchings over 2 years ago - 1 comment
Labels: Data Stream: Physio, issue type: metric update

#59 - quantifying FOV matching across sessions

Issue - State: open - Opened by matchings over 2 years ago - 1 comment
Labels: Data Stream: Physio, issue type: metric update

#58 - Mouse-seeks sessions log "Filters" not working

Issue - State: closed - Opened by samiamseid over 2 years ago - 2 comments
Labels: software: mouse-seeks

#58 - Mouse-seeks sessions log "Filters" not working

Issue - State: closed - Opened by samiamseid over 2 years ago - 2 comments
Labels: software: mouse-seeks

#57 - LIMS processes failing at 3am

Issue - State: closed - Opened by samiamseid over 2 years ago - 3 comments
Labels: Data processing issue

#57 - LIMS processes failing at 3am

Issue - State: closed - Opened by samiamseid over 2 years ago - 3 comments
Labels: Data processing issue

#56 - mTrain functionality issues

Issue - State: closed - Opened by samiamseid over 2 years ago - 4 comments
Labels: software: mtrain

#55 - Create Opaque or other border to identify the motion correction wrapping border.

Issue - State: closed - Opened by samiamseid almost 3 years ago - 2 comments
Labels: issue type: feature request, software: mouse-seeks

#55 - Create Opaque or other border to identify the motion correction wrapping border.

Issue - State: closed - Opened by samiamseid almost 3 years ago - 2 comments
Labels: issue type: feature request, software: mouse-seeks

#54 - Decision needed on decay time constants for GAD2;Ai195 and Ai210 lines

Issue - State: closed - Opened by pgroblewski almost 3 years ago - 3 comments
Labels: issue type: information &/or decision

#53 - incomplete information in some qc reports

Issue - State: closed - Opened by DowntonCrabby almost 3 years ago - 2 comments
Labels: issue type: feature request, software: mouse-seeks

#53 - incomplete information in some qc reports

Issue - State: closed - Opened by DowntonCrabby almost 3 years ago - 2 comments
Labels: issue type: feature request, software: mouse-seeks

#52 - out of date datacubes present in mouse-seeks

Issue - State: closed - Opened by DowntonCrabby almost 3 years ago - 2 comments
Labels: software: mouse-seeks

#52 - out of date datacubes present in mouse-seeks

Issue - State: closed - Opened by DowntonCrabby almost 3 years ago - 2 comments
Labels: software: mouse-seeks

#51 - Wheel encoder/Running plots not available in non-behavior sessions

Issue - State: closed - Opened by samiamseid almost 3 years ago - 4 comments
Labels: software: mouse-seeks

#51 - Wheel encoder/Running plots not available in non-behavior sessions

Issue - State: closed - Opened by samiamseid almost 3 years ago - 4 comments
Labels: software: mouse-seeks

#50 - Pretest for Mesoscope/Deepscope

Issue - State: closed - Opened by samiamseid almost 3 years ago - 3 comments
Labels: issue type: feature request

#50 - Pretest for Mesoscope/Deepscope

Issue - State: closed - Opened by samiamseid almost 3 years ago - 3 comments
Labels: issue type: feature request

#49 - Cell_ROI_Creation_queue failing for omFISHGad2Meso sessions

Issue - State: closed - Opened by samiamseid almost 3 years ago - 1 comment
Labels: issue type: QC Issue

#49 - Cell_ROI_Creation_queue failing for omFISHGad2Meso sessions

Issue - State: closed - Opened by samiamseid almost 3 years ago - 1 comment
Labels: issue type: QC Issue

#48 - SDK updates needed to accommodate metadata frame from MVR

Issue - State: closed - Opened by DowntonCrabby almost 3 years ago - 13 comments
Labels: issue type: metric update, software: SDK

#48 - SDK updates needed to accommodate metadata frame from MVR

Issue - State: closed - Opened by DowntonCrabby almost 3 years ago - 13 comments
Labels: issue type: metric update, software: SDK

#47 - independent qc & release of individual datastreams for phase 4 projects

Issue - State: open - Opened by DowntonCrabby almost 3 years ago - 1 comment
Labels: Project: Learning mFish, issue type: information &/or decision

#47 - independent qc & release of individual datastreams for phase 4 projects

Issue - State: open - Opened by DowntonCrabby almost 3 years ago - 1 comment
Labels: Project: Learning mFish, issue type: information &/or decision