allencellmodeling/pytorch_integrated_cell issues and pull requests

#102 - Bump scipy from 1.1.0 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#101 - Bump torch from 1.2.0 to 1.13.1

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#100 - Bump pillow from 5.2.0 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#99 - No matching distribution for lkaccess

Issue - State: open - Opened by antoineruzette about 2 years ago

#98 - Bump pillow from 5.2.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#97 - Bump pillow from 5.2.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#96 - Bump pillow from 5.2.0 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#95 - inplace operation Runtime Failure

Issue - State: open - Opened by JPFrancis over 3 years ago

#94 - Bump pillow from 5.2.0 to 8.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#93 - Bump pillow from 5.2.0 to 8.1.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#92 - merge actk dp etc into master

Issue - State: open - Opened by donovanr almost 4 years ago
Labels: enhancement

#91 - Serotiny workflow integration: Reimplement some of the notebooks in serotiny

Issue - State: closed - Opened by ritvikvasan almost 4 years ago - 1 comment

#90 - New results: Analyze latent space of the segmentation models for the variance, and mito datasets

Issue - State: open - Opened by ritvikvasan almost 4 years ago

#89 - Documentation: Args file and its contents

Issue - State: open - Opened by ritvikvasan almost 4 years ago

#88 - Notebook example: Pass a single image through a trained model (ref and structure), get latent vector, generate structure

Issue - State: open - Opened by ritvikvasan almost 4 years ago

#87 - Notebook example: Generate multiple structures from a trained model into a single cell shape

Issue - State: open - Opened by ritvikvasan almost 4 years ago

#86 - Notebook example: Explore latent space of a trained model

Issue - State: open - Opened by ritvikvasan almost 4 years ago

#85 - Notebook example: Train a 2D, 3D model on any dataset from scratch

Issue - State: open - Opened by ritvikvasan almost 4 years ago

#84 - Ref segmentations

Pull Request - State: open - Opened by donovanr almost 4 years ago

#83 - fix model diagram image

Issue - State: open - Opened by donovanr almost 4 years ago
Labels: manuscript

#82 - PlosCompBiol submission guidelines

Issue - State: open - Opened by tknijnen about 4 years ago
Labels: manuscript

#81 - logistics: Add authors to manuscript

Issue - State: closed - Opened by donovanr over 4 years ago
Labels: manuscript

#80 - logistics: clean up manuscript to get started again

Issue - State: closed - Opened by donovanr over 4 years ago
Labels: manuscript

#79 - Discussion: vanilla is ok

Issue - State: closed - Opened by donovanr over 4 years ago - 3 comments
Labels: manuscript

#78 - Discussion: latent space orthogonality / reproducibility

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#77 - Discussion: Loss function

Issue - State: closed - Opened by donovanr over 4 years ago - 2 comments
Labels: manuscript

#76 - Discussion: β-VAE vs GAN

Issue - State: open - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#75 - Results: Content related to Fig. 5

Issue - State: open - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#74 - Results: Figure 5

Issue - State: open - Opened by donovanr over 4 years ago - 2 comments
Labels: manuscript

#73 - Results: Content related to Fig. 4b

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#72 - Results: Content related to Fig. 4

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#71 - Results: Figure 4

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#70 - Results: latent space truncation

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#69 - Results: interpretation of the latent space dimensions

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#68 - Results: reconstruction vs. compactness -- KL vs. dim plot

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#67 - Results: Content related to Fig. 3

Issue - State: open - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#66 - Results: Figure 3

Issue - State: open - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#65 - Results: talk up good organelle distributions

Issue - State: open - Opened by donovanr over 4 years ago
Labels: manuscript

#64 - Results: Content related to Fig. 2

Issue - State: closed - Opened by donovanr over 4 years ago
Labels: manuscript

#63 - Results: Figure 2

Issue - State: open - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#62 - Results: Table 1

Issue - State: closed - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#61 - Results: Figure 1

Issue - State: open - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#60 - Intro: Finesse raw vs segmented images

Issue - State: closed - Opened by donovanr over 4 years ago - 1 comment
Labels: manuscript

#59 - Intro: contribution specificity

Issue - State: closed - Opened by donovanr over 4 years ago
Labels: manuscript

#58 - Intro: citations

Issue - State: closed - Opened by donovanr over 4 years ago
Labels: manuscript

#57 - Add contributing agreement markdown from AI

Issue - State: closed - Opened by Kimcmetzler over 4 years ago - 1 comment

#56 - Code: Error during 'pip install'

Issue - State: open - Opened by Calebium over 4 years ago - 1 comment
Labels: bug, manuscript

#55 - Pape

Pull Request - State: closed - Opened by gregjohnso over 4 years ago - 1 comment