allencellmodeling/pytorch_fnet issues and pull requests

#87 - General updates

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#86 - Plot fixes

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#85 - General updates

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#84 - updates for CORRECTED cmax and r instead of r^2 values

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#83 - Cmax plots

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#82 - General updates

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#81 - Cl tool updates

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#80 - Add additional dataset csvs

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#79 - Sample without replacement

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#78 - Add sklearn to docker image

Issue - State: closed - Opened by counkomol almost 7 years ago

#77 - added history log for buffered patch datset, and option to shuffle im…

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#76 - Registration v1

Pull Request - State: closed - Opened by fcollman almost 7 years ago

#75 - Updated figure printing

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#74 - Issue 73

Pull Request - State: closed - Opened by counkomol about 7 years ago

#73 - Update prediction script to work with many models

Issue - State: closed - Opened by counkomol about 7 years ago - 2 comments
Labels: high priority

#72 - Add fnet_model test

Pull Request - State: closed - Opened by counkomol about 7 years ago

#71 - Fix moving of optimizer params to cpu before model save

Pull Request - State: closed - Opened by counkomol about 7 years ago

#70 - Issue 3

Pull Request - State: closed - Opened by counkomol about 7 years ago

#69 - Issue 50

Pull Request - State: closed - Opened by counkomol about 7 years ago

#68 - Issue 66

Pull Request - State: closed - Opened by counkomol about 7 years ago

#67 - Make Figure 1

Issue - State: closed - Opened by fcollman about 7 years ago - 1 comment
Labels: high priority

#66 - make pre prediction cropping, and post prediction pad with zero

Issue - State: closed - Opened by fcollman about 7 years ago - 1 comment
Labels: high priority

#65 - Create cross modal registration code

Issue - State: closed - Opened by fcollman about 7 years ago - 1 comment
Labels: high priority

#64 - Create a csv for registration testing

Issue - State: closed - Opened by fcollman about 7 years ago - 2 comments
Labels: high priority

#63 - make scripts/paper folder for paper

Issue - State: closed - Opened by fcollman about 7 years ago - 4 comments
Labels: high priority

#62 - Produce 2d predictions of EM datasets

Issue - State: closed - Opened by fcollman about 7 years ago - 1 comment

#61 - Look into possible multiple GPU bug

Issue - State: closed - Opened by fcollman about 7 years ago - 1 comment

#60 - handle missing data column

Issue - State: closed - Opened by fcollman about 7 years ago - 3 comments
Labels: high priority

#59 - Update predict.py so paths in output log are relative to log

Pull Request - State: closed - Opened by counkomol about 7 years ago

#58 - output logs should contain relative paths

Issue - State: closed - Opened by gregjohnso about 7 years ago

#57 - Remove legacy code and files

Pull Request - State: closed - Opened by counkomol about 7 years ago

#56 - Make evaluation script

Issue - State: closed - Opened by counkomol about 7 years ago - 2 comments
Labels: high priority

#55 - Issue 49

Pull Request - State: closed - Opened by counkomol about 7 years ago

#54 - Issue 49

Pull Request - State: closed - Opened by counkomol about 7 years ago

#53 - Remove old code and files

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#52 - adding aicsimage as a package that is installed

Pull Request - State: closed - Opened by fcollman about 7 years ago

#51 - add me as a collaborator

Issue - State: closed - Opened by fcollman about 7 years ago

#50 - Add missing datasets

Issue - State: closed - Opened by counkomol about 7 years ago - 2 comments
Labels: high priority

#49 - Make datasets loadable from command line

Issue - State: closed - Opened by counkomol about 7 years ago - 1 comment

#48 - Change random seeds

Pull Request - State: closed - Opened by counkomol about 7 years ago

#47 - Issue 41 move files

Pull Request - State: closed - Opened by counkomol about 7 years ago

#46 - Issue 21

Pull Request - State: closed - Opened by counkomol about 7 years ago

#45 - updates for dataset object and corresponding tests for data transform…

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#44 - added test data

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#43 - fix for buffered patch dataset to allow for image channels

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#42 - "ValueError" in BufferedPatchDataset

Issue - State: closed - Opened by counkomol about 7 years ago - 1 comment

#41 - Move *.py files (except setup.py) into fnet directory

Issue - State: closed - Opened by counkomol about 7 years ago - 3 comments

#40 - Move BufferedPatchDataset, DummyChunkDataset to their own files

Pull Request - State: closed - Opened by counkomol about 7 years ago

#39 - updates for channels in dataset objects

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#38 - Move BufferedPatchDataset and dummy chunk dataset to their own files.

Issue - State: closed - Opened by counkomol about 7 years ago

#37 - Datset tests

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#36 - Unit tests for datasets

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#35 - Issue 32

Pull Request - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#34 - Add one test .tiff and .czi files to repo

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#33 - add tqdm to requirements

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#32 - Add tqdm library to docker image

Issue - State: closed - Opened by counkomol about 7 years ago - 1 comment

#31 - renamed 'tifdataset' to 'tiffdataset' to be consistant across object …

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#30 - Fix image order dimensions for CziDataset

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment
Labels: high priority

#29 - TifDataset need to return a torch tensor

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#28 - 2 d tif dataset

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#27 - Dataset update

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#26 - adding 2d tiff dataset

Pull Request - State: closed - Opened by sharmishtaa about 7 years ago - 1 comment

#25 - Dataset update

Pull Request - State: closed - Opened by sharmishtaa about 7 years ago

#24 - Add 2d u-net neural net definition

Pull Request - State: closed - Opened by counkomol about 7 years ago

#23 - Add dataset for 2D tiff reading

Issue - State: closed - Opened by sharmishtaa about 7 years ago - 1 comment

#22 - Change all random seeds to "0"

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#21 - training code update for dataloader

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment
Labels: high priority

#20 - 2D model definition

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#19 - Chunk Dataset object

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#18 - 2D Dataset object

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#17 - 3D Dataset object

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#16 - 2D data collection as .csv

Issue - State: closed - Opened by gregjohnso about 7 years ago - 2 comments

#15 - 3D Data collection as .csv

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#14 - formats for readability

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#13 - Updates for dockerfile to pull fixed version of pytorch

Pull Request - State: closed - Opened by gregjohnso about 7 years ago

#12 - environment changes

Pull Request - State: closed - Opened by fcollman about 7 years ago

#11 - Have clear instructions for how to download and run first test dataset on naive machine that works.

Issue - State: closed - Opened by fcollman about 7 years ago - 1 comment
Labels: high priority

#10 - several fixes

Pull Request - State: closed - Opened by fcollman about 7 years ago

#9 - Docker build doesn't work, build script also not executable

Issue - State: closed - Opened by fcollman about 7 years ago - 4 comments

#8 - Make pip installable

Issue - State: closed - Opened by gregjohnso about 7 years ago - 1 comment

#7 - Check in Dockerfile definition

Issue - State: closed - Opened by gregjohnso over 7 years ago - 1 comment

#6 - Add Readme

Issue - State: closed - Opened by gregjohnso over 7 years ago

#5 - Verify Multi-GPU training

Issue - State: closed - Opened by gregjohnso over 7 years ago - 2 comments

#4 - Make figure/movie utils

Issue - State: closed - Opened by gregjohnso over 7 years ago - 3 comments
Labels: high priority

#3 - Make command-line prediction function

Issue - State: closed - Opened by gregjohnso over 7 years ago

#2 - Make save_progress and save_state functions

Issue - State: closed - Opened by gregjohnso over 7 years ago

#1 - Freeze Saving/Loading

Issue - State: closed - Opened by gregjohnso over 7 years ago

GitHub / allencellmodeling/pytorch_fnet issues and pull requests