Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / allencellmodeling/pytorch_fnet issues and pull requests

#186 - Running pip install . gives error

Issue - State: open - Opened by jamila-griffith 10 months ago - 2 comments

#185 - An Improved Version Published in CVPR2023

Issue - State: open - Opened by Correr-Zhou over 1 year ago

#184 - Weighted Loss

Issue - State: open - Opened by parthnatekar over 2 years ago - 1 comment

#183 - Incompatible with "Hyperstack" tif file saved from ImageJ

Issue - State: open - Opened by wong-ziyi almost 3 years ago

#182 - Predict 2D images

Issue - State: open - Opened by NikLi66 over 3 years ago

#181 - cannot unsqueeze empty tensor

Issue - State: open - Opened by ateneyck1 over 3 years ago - 1 comment

#180 - Errors when trying to predict after training

Issue - State: open - Opened by SirishNutakki over 3 years ago - 4 comments

#179 - There are many grids on predict results

Issue - State: open - Opened by mQvQ over 3 years ago - 4 comments

#178 - bug-fix/NaN error in examples

Pull Request - State: open - Opened by zsdqui about 4 years ago

#177 - question about the data

Issue - State: closed - Opened by Cptmaxon over 4 years ago - 3 comments

#176 - download_and_train does not train the model

Issue - State: open - Opened by Surabhiad over 4 years ago

#175 - Integer to NaN error with download_and_train.py

Issue - State: open - Opened by mattpharris over 4 years ago - 1 comment

#174 - Issue running download_and_train.py

Issue - State: open - Opened by TerDiv4 almost 5 years ago - 3 comments

#173 - Could not train the model on AWS

Issue - State: open - Opened by Li-En-Good almost 5 years ago - 2 comments

#172 - torch.Size([1, 7, 624, 924]) incompatible with patch_shape [32, 64, 64]

Issue - State: open - Opened by michalstepniewski almost 5 years ago - 3 comments

#171 - Training example issues with csv creation

Issue - State: open - Opened by SamPIngram almost 5 years ago - 2 comments

#169 - Enhancement/api tools

Pull Request - State: closed - Opened by gregjohnso almost 5 years ago

#168 - Enhancement/api tools

Pull Request - State: closed - Opened by gregjohnso almost 5 years ago

#167 - Mismatching dimensions in download_and_train.py

Issue - State: closed - Opened by dsethz almost 5 years ago - 3 comments

#166 - Can I train on CPUs?

Issue - State: closed - Opened by michalstepniewski almost 5 years ago - 1 comment
Labels: help wanted

#165 - fix inconsistency in multi-channel network

Pull Request - State: closed - Opened by ShixingWang almost 5 years ago - 3 comments

#164 - Enhancement/api tools

Pull Request - State: closed - Opened by gregjohnso almost 5 years ago

#163 - Enhancement/multichtiffdata

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#162 - bugfix/fix-documentation

Pull Request - State: closed - Opened by evamaxfield about 5 years ago

#161 - Enhancement/pypi ify

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#160 - Enhancement/pypi ify

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#159 - Enhancement/pypi ify

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#158 - Converting to AICS cookiecutter

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#157 - Master branch loss not coming down

Issue - State: closed - Opened by jodusan about 5 years ago - 4 comments
Labels: useful debugging

#156 - Update README.md

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#155 - Make sure default values are correct data type

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#154 - Update README.md

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#153 - GPU memory allocation

Issue - State: open - Opened by siewerthug about 5 years ago - 5 comments

#152 - bugfix for examples due to cli changes

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#151 - Issue when running the example

Issue - State: closed - Opened by SmoliKat about 5 years ago - 5 comments

#150 - version bump and quilt updates

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#149 - problem with botocore\quilt 3

Issue - State: closed - Opened by SmoliKat about 5 years ago - 2 comments

#148 - Bugfix/download and train

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#147 - Fnet training

Pull Request - State: closed - Opened by gregjohnso about 5 years ago

#146 - add documentation and example for new Python API

Issue - State: open - Opened by jxchen01 over 5 years ago
Labels: enhancement

#145 - Problem training fnet in google colab

Issue - State: closed - Opened by lucpaul over 5 years ago - 12 comments

#144 - Enhancement/train pred python api

Pull Request - State: closed - Opened by counkomol over 5 years ago

#143 - Enhancement/train pred python api

Pull Request - State: closed - Opened by counkomol over 5 years ago

#142 - Enhancement/target weight maps

Pull Request - State: closed - Opened by counkomol over 5 years ago

#141 - Setting the number of GPU to be used in the training

Issue - State: open - Opened by Gamalol over 5 years ago

#140 - Including pre-trained models?

Issue - State: open - Opened by JPFrancis over 5 years ago - 6 comments

#139 - Add support for weighted MSE

Issue - State: closed - Opened by counkomol over 5 years ago - 2 comments
Labels: enhancement

#138 - Implement apply_on_single_zstack in fnet_model

Issue - State: open - Opened by counkomol over 5 years ago - 1 comment
Labels: enhancement

#137 - Fix plotting error

Pull Request - State: closed - Opened by counkomol over 5 years ago
Labels: bug

#136 - Validate indices of input CSVs for Fnet datasets

Issue - State: open - Opened by counkomol over 5 years ago
Labels: enhancement

#135 - Update bpds

Pull Request - State: closed - Opened by counkomol over 5 years ago - 1 comment
Labels: bug, enhancement

#134 - update to newest version of t4 and use most recent AICS data package

Pull Request - State: closed - Opened by gregjohnso over 5 years ago

#133 - Update csv splitter command-line tool

Issue - State: open - Opened by counkomol over 5 years ago
Labels: enhancement

#132 - Update predict command-line tool so it can read options from jsons

Issue - State: open - Opened by counkomol over 5 years ago
Labels: enhancement

#130 - Update BufferedPatchDataset

Issue - State: closed - Opened by counkomol over 5 years ago - 1 comment
Labels: bug, enhancement

#129 - Use logging

Pull Request - State: closed - Opened by counkomol almost 6 years ago
Labels: bug, enhancement

#128 - Convert to pathlib

Issue - State: open - Opened by counkomol almost 6 years ago
Labels: enhancement

#127 - Add pylint coverage

Issue - State: closed - Opened by counkomol almost 6 years ago
Labels: enhancement

#126 - Update readme

Pull Request - State: closed - Opened by counkomol almost 6 years ago
Labels: bug

#125 - Fnet train cannot create jsons in the cwd

Issue - State: open - Opened by counkomol almost 6 years ago
Labels: bug

#124 - Remove gpu_id from saved fnet model state

Issue - State: open - Opened by counkomol almost 6 years ago - 2 comments
Labels: bug

#123 - Implement pre-predict and post-predict transforms in fnet model

Issue - State: open - Opened by counkomol almost 6 years ago
Labels: enhancement

#122 - Allow number of training iterations to be specificed in terms of epochs

Issue - State: open - Opened by counkomol almost 6 years ago
Labels: enhancement

#121 - Convert print statements to logging module calls

Issue - State: closed - Opened by counkomol almost 6 years ago
Labels: enhancement

#120 - Training script should handle jsons with missing fields

Issue - State: open - Opened by counkomol almost 6 years ago
Labels: bug

#119 - RuntimeError: sequence argument must have length equal to input rank

Issue - State: closed - Opened by NiklasTR almost 6 years ago - 3 comments

#118 - unrecognized arguments: --dataset_kwargs {

Issue - State: closed - Opened by mmitterma almost 6 years ago - 6 comments

#117 - change name is setup.py from pytorch_fnet to fnet

Pull Request - State: closed - Opened by donovanr almost 6 years ago
Labels: bug

#116 - torch >= 1.0

Pull Request - State: closed - Opened by donovanr almost 6 years ago

#115 - change torch==1.0 to torch>=1.0

Issue - State: closed - Opened by donovanr almost 6 years ago - 1 comment
Labels: enhancement

#114 - Update readme

Issue - State: closed - Opened by counkomol almost 6 years ago
Labels: bug

#113 - Python API for Fnet "train" and "predict"

Issue - State: open - Opened by gregjohnso almost 6 years ago
Labels: enhancement

#112 - Tests for MultiChTiffDataset

Issue - State: open - Opened by gregjohnso almost 6 years ago
Labels: bug

#111 - Update pytorch

Pull Request - State: closed - Opened by counkomol almost 6 years ago - 2 comments

#110 - Add tests for command-line functionality

Pull Request - State: closed - Opened by counkomol almost 6 years ago

#109 - feature/add-example-scripts

Pull Request - State: closed - Opened by gregjohnso almost 6 years ago - 2 comments

#108 - Quilt example (downloading and training)

Pull Request - State: closed - Opened by gregjohnso almost 6 years ago

#107 - Better predict

Pull Request - State: closed - Opened by counkomol almost 6 years ago

#106 - Syntax eror in test script

Issue - State: closed - Opened by mmitterma almost 6 years ago - 1 comment

#105 - Specify dimension requirement

Issue - State: open - Opened by jxchen01 almost 6 years ago - 4 comments
Labels: enhancement

#104 - More tests

Pull Request - State: closed - Opened by counkomol almost 6 years ago

#103 - Env test

Pull Request - State: closed - Opened by counkomol almost 6 years ago

#102 - Problem when running with another dataset

Issue - State: closed - Opened by cindyfu about 6 years ago - 3 comments

#101 - error when I try to run ./train_model.sh dna 0

Issue - State: closed - Opened by sll513 about 6 years ago - 5 comments

#100 - Stitched

Pull Request - State: closed - Opened by gregjohnso over 6 years ago - 1 comment

#99 - Terminate if error function reads "NAN"

Issue - State: open - Opened by gregjohnso over 6 years ago - 1 comment
Labels: enhancement

#98 - General updates

Pull Request - State: closed - Opened by counkomol over 6 years ago

#97 - Add version of network with specifiable parameters and update platfor…

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#96 - pip install doesn't install submodules

Issue - State: closed - Opened by evamaxfield almost 7 years ago - 1 comment
Labels: bug

#95 - Add multi-gpu and save/load/predict tests for fnet_model

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#94 - Add README to create symlinks and revert scripts/predict.sh to simple…

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#93 - updates for downloading data and a correct prediction script

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#92 - Update bufferedpatchdataset with no buffer swap functionality, update…

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#91 - General updates

Pull Request - State: closed - Opened by counkomol almost 7 years ago - 1 comment

#90 - Readme updates

Pull Request - State: closed - Opened by counkomol almost 7 years ago

#89 - Model updates

Pull Request - State: closed - Opened by gregjohnso almost 7 years ago

#88 - updating README

Pull Request - State: closed - Opened by fcollman almost 7 years ago