allencellmodeling/cyto-dl issues and pull requests

#457 - minor bugfix for the ckpt config

Pull Request - State: open - Opened by fatwir 4 days ago

#456 - Make Requirements action is broken

Issue - State: open - Opened by pgarrison 8 days ago

#455 - added wandb logger

Pull Request - State: open - Opened by fatwir about 2 months ago - 1 comment

#454 - Allow numpy array passed into autothresholding function

Pull Request - State: open - Opened by yrkim98 2 months ago

#453 - Bump version and publish

Pull Request - State: closed - Opened by github-actions[bot] 2 months ago

#452 - add predict to saving callback

Pull Request - State: closed - Opened by yrkim98 2 months ago

#451 - Feature/simplify multidim dataloading

Pull Request - State: closed - Opened by benjijamorris 3 months ago

#450 - Feature/simplify multidim dataloading (#448)

Pull Request - State: closed - Opened by benjijamorris 3 months ago

#449 - Feature/diffae

Pull Request - State: closed - Opened by benjijamorris 3 months ago - 6 comments

#448 - Feature/simplify multidim dataloading

Pull Request - State: closed - Opened by benjijamorris 3 months ago

#447 - Feature/tabular data saving

Pull Request - State: closed - Opened by benjijamorris 3 months ago

#446 - Bump version and publish

Pull Request - State: closed - Opened by github-actions[bot] 3 months ago

#445 - Remove unnecessary images

Pull Request - State: closed - Opened by benjijamorris 3 months ago - 1 comment

#444 - Bump version and publish

Pull Request - State: closed - Opened by github-actions[bot] 3 months ago

#443 - Default to strict=True for plugin config, add overlap

Pull Request - State: closed - Opened by yrkim98 3 months ago

#440 - admin/requirements-update_2024-10-11_19-33

Pull Request - State: open - Opened by github-actions[bot] 4 months ago

#435 - Python 311

Pull Request - State: open - Opened by pgarrison 4 months ago

#100 - bugfix/lightning_init_args

Pull Request - State: closed - Opened by colobas almost 2 years ago

#100 - bugfix/lightning_init_args

Pull Request - State: closed - Opened by colobas almost 2 years ago

#99 - feature/export_txt_reqs

Pull Request - State: closed - Opened by colobas almost 2 years ago

#99 - feature/export_txt_reqs

Pull Request - State: closed - Opened by colobas almost 2 years ago

#98 - configuration global testing

Pull Request - State: closed - Opened by BrianWhitneyAI almost 2 years ago

#98 - configuration global testing

Pull Request - State: closed - Opened by BrianWhitneyAI almost 2 years ago

#97 - Reorganize

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#97 - Reorganize

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#96 - upload package versions to mlflow

Issue - State: closed - Opened by benjijamorris almost 2 years ago

#96 - upload package versions to mlflow

Issue - State: closed - Opened by benjijamorris almost 2 years ago

#95 - move files into im2im or vae folders

Issue - State: closed - Opened by benjijamorris almost 2 years ago - 2 comments

#95 - move files into im2im or vae folders

Issue - State: closed - Opened by benjijamorris almost 2 years ago - 2 comments

#94 - don't ignore data folder in configs

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#94 - don't ignore data folder in configs

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#93 - Bugfix/config paths

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#93 - Bugfix/config paths

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#92 - check if file exists

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#92 - check if file exists

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#91 - update mlflow logger name

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#91 - update mlflow logger name

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#90 - fix missing import

Pull Request - State: closed - Opened by gouthamr321 almost 2 years ago

#90 - fix missing import

Pull Request - State: closed - Opened by gouthamr321 almost 2 years ago

#89 - fix postprocessing

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#89 - fix postprocessing

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#88 - Issue with args updating in models.base_model._parse_init_args()

Issue - State: closed - Opened by gouthamr321 almost 2 years ago - 1 comment

#88 - Issue with args updating in models.base_model._parse_init_args()

Issue - State: closed - Opened by gouthamr321 almost 2 years ago - 1 comment

#87 - update interpolation

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#87 - update interpolation

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#86 - Bugfix/omnipose

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#86 - Bugfix/omnipose

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#85 - make mlflow fault tolerant

Issue - State: closed - Opened by benjijamorris almost 2 years ago - 1 comment

#85 - make mlflow fault tolerant

Issue - State: closed - Opened by benjijamorris almost 2 years ago - 1 comment

#84 - move postprocessing and loss calculation into the auxhead class

Issue - State: closed - Opened by benjijamorris almost 2 years ago
Labels: enhancement

#84 - move postprocessing and loss calculation into the auxhead class

Issue - State: closed - Opened by benjijamorris almost 2 years ago
Labels: enhancement

#83 - add contact sheet generation callback

Issue - State: closed - Opened by benjijamorris almost 2 years ago
Labels: enhancement

#83 - add contact sheet generation callback

Issue - State: closed - Opened by benjijamorris almost 2 years ago
Labels: enhancement

#82 - add shape analysis validation callback

Issue - State: closed - Opened by benjijamorris almost 2 years ago
Labels: enhancement

#82 - add shape analysis validation callback

Issue - State: closed - Opened by benjijamorris almost 2 years ago
Labels: enhancement

#81 - check cache_dir is given

Pull Request - State: closed - Opened by colobas almost 2 years ago

#81 - check cache_dir is given

Pull Request - State: closed - Opened by colobas almost 2 years ago

#80 - set experiment_name by default

Pull Request - State: closed - Opened by colobas almost 2 years ago

#80 - set experiment_name by default

Pull Request - State: closed - Opened by colobas almost 2 years ago

#79 - root is where command is invoked

Pull Request - State: closed - Opened by colobas almost 2 years ago

#79 - root is where command is invoked

Pull Request - State: closed - Opened by colobas almost 2 years ago

#78 - fix previous bad substitution

Pull Request - State: closed - Opened by colobas almost 2 years ago

#78 - fix previous bad substitution

Pull Request - State: closed - Opened by colobas almost 2 years ago

#77 - rename datamodule -> data in train.yaml

Pull Request - State: closed - Opened by colobas almost 2 years ago

#77 - rename datamodule -> data in train.yaml

Pull Request - State: closed - Opened by colobas almost 2 years ago

#76 - update deps

Pull Request - State: closed - Opened by colobas almost 2 years ago

#76 - update deps

Pull Request - State: closed - Opened by colobas almost 2 years ago

#75 - fix imports from collections

Pull Request - State: closed - Opened by colobas almost 2 years ago

#75 - fix imports from collections

Pull Request - State: closed - Opened by colobas almost 2 years ago

#74 - add missing data configs

Pull Request - State: closed - Opened by colobas almost 2 years ago

#74 - add missing data configs

Pull Request - State: closed - Opened by colobas almost 2 years ago

#73 - rename datamodules config -> data

Pull Request - State: closed - Opened by colobas almost 2 years ago

#73 - rename datamodules config -> data

Pull Request - State: closed - Opened by colobas almost 2 years ago

#72 - unify

Pull Request - State: closed - Opened by colobas almost 2 years ago - 1 comment

#72 - unify

Pull Request - State: closed - Opened by colobas almost 2 years ago - 1 comment

#71 - Cleanup

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#71 - Cleanup

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#70 - Feature/omnipose

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#70 - Feature/omnipose

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#69 - allow medium precision on a100s in extras:precision

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#69 - allow medium precision on a100s in extras:precision

Pull Request - State: closed - Opened by benjijamorris almost 2 years ago

#68 - Prevent patch size > image size

Issue - State: closed - Opened by benjijamorris almost 2 years ago - 1 comment

#68 - Prevent patch size > image size

Issue - State: closed - Opened by benjijamorris almost 2 years ago - 1 comment

#67 - Update packaging requirement from <23 to <24

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#67 - Update packaging requirement from <23 to <24

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#66 - pin packaging

Pull Request - State: closed - Opened by benjijamorris about 2 years ago

#66 - pin packaging

Pull Request - State: closed - Opened by benjijamorris about 2 years ago

#65 - Bug: "No such file or directory" for /tmp/ files after 400+ epochs

Issue - State: closed - Opened by mfs4rd about 2 years ago - 4 comments

#65 - Bug: "No such file or directory" for /tmp/ files after 400+ epochs

Issue - State: closed - Opened by mfs4rd about 2 years ago - 4 comments

#64 - Update numpy requirement from <1.24 to <1.25

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#64 - Update numpy requirement from <1.24 to <1.25

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#63 - Feature/use same config for train and test

Pull Request - State: closed - Opened by benjijamorris about 2 years ago

#63 - Feature/use same config for train and test

Pull Request - State: closed - Opened by benjijamorris about 2 years ago

#62 - use same config for training and prediction

Issue - State: closed - Opened by benjijamorris about 2 years ago
Labels: enhancement

#62 - use same config for training and prediction

Issue - State: closed - Opened by benjijamorris about 2 years ago
Labels: enhancement

#61 - allow multiclass training with sparse labels

Issue - State: closed - Opened by benjijamorris about 2 years ago
Labels: enhancement

#61 - allow multiclass training with sparse labels

Issue - State: closed - Opened by benjijamorris about 2 years ago
Labels: enhancement

#60 - fix testing for default configs

Issue - State: closed - Opened by benjijamorris about 2 years ago

#60 - fix testing for default configs

Issue - State: closed - Opened by benjijamorris about 2 years ago

#59 - change title font color

Pull Request - State: closed - Opened by benjijamorris about 2 years ago

GitHub / allencellmodeling/cyto-dl issues and pull requests