allenai/scispacy issues and pull requests

#432 - Installation issue with Python 3.9

Issue - State: closed - Opened by smakurugoda over 2 years ago - 1 comment

#431 - pip install failed

Issue - State: closed - Opened by zhangweida2080 over 2 years ago - 1 comment

#430 - HTTPSCOnnectionPool for s3=us-west-2.amazonaws.com

Issue - State: closed - Opened by HodaMemar over 2 years ago - 1 comment

#429 - Entity linking future directions

Issue - State: open - Opened by eric-czech over 2 years ago - 3 comments
Labels: enhancement

#428 - Combining EntityLinker

Issue - State: closed - Opened by GDsika over 2 years ago - 1 comment

#427 - how to get per entity evaluation score in ner models of scispacy

Issue - State: closed - Opened by Utkarsh-2511 over 2 years ago - 1 comment

#426 - Install issue with nmslib

Issue - State: closed - Opened by dataRunner2 over 2 years ago - 1 comment

#425 - Spacy 32 upgrade

Pull Request - State: closed - Opened by dakinggg over 2 years ago

#424 - Compatibility with Apple Silicon

Issue - State: closed - Opened by ghostintheshellarise over 2 years ago - 2 comments

#423 - Pin black dependency due to compatibility issue between click (from b…

Pull Request - State: closed - Opened by dakinggg over 2 years ago

#422 - Pin black dependency due to compatibility issue between click (from b…

Pull Request - State: closed - Opened by dakinggg over 2 years ago

#421 - any guidance on ontonotes prep?

Issue - State: open - Opened by mprorock over 2 years ago - 1 comment
Labels: documentation

#420 - Correct a download issue related to s3 auth

Pull Request - State: closed - Opened by mprorock over 2 years ago - 2 comments

#419 - AWS permissions

Issue - State: closed - Opened by mprorock over 2 years ago - 3 comments

#418 - Replacing Abbreviations with the long form

Issue - State: closed - Opened by nermeetadhillon over 2 years ago - 1 comment

#417 - Support for Python 3.9 and Spacy 3.2.2

Issue - State: closed - Opened by avoutsas67 over 2 years ago - 5 comments

#413 - Re: error using the static vectors in Entity Linking example

Issue - State: closed - Opened by BengWord2Vec almost 3 years ago - 1 comment

#411 - Update spacy dependency version

Pull Request - State: closed - Opened by MichalMalyska almost 3 years ago - 5 comments

#403 - UserWarning: [W031] Model 'en_skills_ner' (2.1.0) requires spaCy v2.1 and is incompatible with the current spaCy version (2.3.5). This may lead to unexpected results or runtime errors. To resolve this, download a newer compatible model or retrain your custom model with the current spaCy version. For more details and available updates, run: python -m spacy validate warnings.warn(warn_msg)

Issue - State: closed - Opened by Baludatascience about 3 years ago - 1 comment

#400 - Models not published with the latest spacy version

Issue - State: closed - Opened by Zethson about 3 years ago - 3 comments

#398 - nmslib error

Issue - State: closed - Opened by RohanNayaks about 3 years ago - 2 comments

#396 - Getting Warnings when using custom KB

Issue - State: closed - Opened by farrandi about 3 years ago - 2 comments

#391 - scispacy with spacy 3.1.1 and prodigy 1.11

Issue - State: closed - Opened by maxfarrell about 3 years ago - 6 comments

#389 - Train scispacy for languages other than English

Issue - State: closed - Opened by fatemerhmi over 3 years ago - 2 comments

#388 - Combining Entities Recognized by Different Models & by the AbbreviationDetector

Issue - State: open - Opened by Salamander230 over 3 years ago - 2 comments
Labels: enhancement, help wanted

#372 - Getting zsh: illegal hardware instruction on MacBook M1

Issue - State: closed - Opened by schittarath3 over 3 years ago - 4 comments

#363 - Demo and offiline version of Scispacy gives different results .

Issue - State: closed - Opened by vyasakhilesh over 3 years ago - 1 comment

#357 - UmlsEntityLinker issue with proxy?

Issue - State: closed - Opened by starz10de over 3 years ago - 8 comments

#355 - EntityLinker knowledge base returns CUIs not MeSH IDs when 'mesh' is selected

Issue - State: open - Opened by xegulon over 3 years ago - 6 comments

#352 - Filtering Entity Linking candidates based on sentence similarity

Issue - State: closed - Opened by vasudev13 over 3 years ago - 1 comment

#350 - DeprecationWarning from `spacy_legacy`

Issue - State: closed - Opened by gautierdag over 3 years ago - 10 comments
Labels: bug

#348 - token probabilities are not included

Issue - State: open - Opened by dakinggg over 3 years ago - 1 comment
Labels: bug

#346 - Add Wikidata as a possible EntityLinker?

Issue - State: open - Opened by lubianat over 3 years ago - 1 comment
Labels: enhancement

#345 - rxnorm linker doesn't work with multiprocessing?

Issue - State: open - Opened by kpich over 3 years ago - 3 comments
Labels: bug

#343 - Running scispacy in a locked-down container

Issue - State: closed - Opened by mnhcorp over 3 years ago - 5 comments

#334 - Entity linker execution demands NMSLIB installation from sources and results in error even after installation

Issue - State: closed - Opened by Rd0394 over 3 years ago - 4 comments

#331 - Entity-linking for other ontologies

Issue - State: open - Opened by BlakeList over 3 years ago - 6 comments
Labels: enhancement

#318 - Error using the static vectors while executing version 0.4.0

Issue - State: closed - Opened by kaushikacharya almost 4 years ago - 8 comments

#316 - scispacy doesn't mark end of entities correctly

Issue - State: closed - Opened by gitclem almost 4 years ago - 6 comments

#305 - try out spacy ray for faster training

Issue - State: open - Opened by dakinggg almost 4 years ago
Labels: code improvement

#304 - train a transformer based model

Issue - State: closed - Opened by dakinggg almost 4 years ago - 4 comments

#302 - Do some hyperparam tuning

Issue - State: open - Opened by dakinggg almost 4 years ago
Labels: model improvement

#300 - Clean up vocab creation

Issue - State: open - Opened by dakinggg almost 4 years ago
Labels: code improvement

#291 - Can't install scispacy on Windows - nmslib build fails

Issue - State: closed - Opened by faxg almost 4 years ago - 8 comments

#277 - Create publish.yml

Pull Request - State: closed - Opened by DeNeutoy about 4 years ago - 1 comment

#253 - EntityLinker and HPO ID

Issue - State: closed - Opened by pixelicus over 4 years ago - 3 comments

#244 - Warning about incompatible spaCy models.

Issue - State: closed - Opened by dwadden over 4 years ago - 11 comments

#237 - Custom (local) UMLS subsets

Issue - State: closed - Opened by ChantalvanSon over 4 years ago - 6 comments

#236 - Wrong named entities report (unbalanced brackets)

Issue - State: open - Opened by iacopy over 4 years ago - 2 comments
Labels: model improvement

#197 - Link to streamlit-based demo code

Issue - State: closed - Opened by karelin over 4 years ago - 3 comments

#188 - Avoid spanning over contiguous sentences in abbreviation resolver

Pull Request - State: closed - Opened by dnanhkhoa almost 5 years ago - 2 comments

#152 - Merging abbreviation long forms

Issue - State: open - Opened by dakinggg over 5 years ago
Labels: enhancement

#134 - Performance of (alpha) UMLS Linker on MedMentions ?

Issue - State: closed - Opened by danlou over 5 years ago - 8 comments

#66 - Evaluate how difficult feature parity with MetamapLite is

Issue - State: closed - Opened by DeNeutoy almost 6 years ago - 3 comments

GitHub / allenai/scispacy issues and pull requests