allen-cell-animated/colorizer-data issues and pull requests

#75 - doc: Added PR and issue ticket templates

Pull Request - State: open - Opened by ShrimpCryptid about 1 month ago
Labels: internals

#74 - Add templates for PRs and issue tickets.

Issue - State: open - Opened by ShrimpCryptid about 1 month ago

#73 - refactor: Updated pre-built viewer

Pull Request - State: closed - Opened by ShrimpCryptid about 2 months ago - 1 comment
Labels: documentation, priority

#72 - refactor: Reorganize repo, update documentation

Pull Request - State: closed - Opened by ShrimpCryptid about 2 months ago
Labels: documentation, priority

#71 - Skip backdrop copy step when files already exist

Issue - State: open - Opened by ShrimpCryptid 2 months ago
Labels: new feature

#70 - feat: Added `source_dir` argument to handle relative paths

Pull Request - State: closed - Opened by ShrimpCryptid 2 months ago
Labels: new feature

#69 - Handle skipped frames in `converter.py`

Issue - State: open - Opened by ShrimpCryptid 2 months ago
Labels: bug

#68 - Add description field to backdrops

Issue - State: open - Opened by ShrimpCryptid 2 months ago
Labels: new feature

#67 - Converter API logging does not show frame progress

Issue - State: open - Opened by ShrimpCryptid 2 months ago
Labels: bug

#66 - feature: Add support for backdrop images in simplified TFE conversion API (pt. 3)

Pull Request - State: closed - Opened by ShrimpCryptid 2 months ago - 1 comment
Labels: new feature

#65 - Update documentation to use new updated API

Issue - State: closed - Opened by ShrimpCryptid 2 months ago
Labels: documentation, priority

#64 - Automated linting/formatting tests

Issue - State: open - Opened by ShrimpCryptid 2 months ago - 1 comment
Labels: new feature, internals

#63 - feature: Additional unit tests for simplified TFE conversion API (pt. 2)

Pull Request - State: closed - Opened by ShrimpCryptid 2 months ago
Labels: new feature

#62 - feature: Added pytest workflow

Pull Request - State: closed - Opened by ShrimpCryptid 2 months ago
Labels: new feature, internals

#61 - feature: Simplified dataset conversion API (pt. 1)

Pull Request - State: closed - Opened by ShrimpCryptid 2 months ago
Labels: new feature

#60 - doc: Update documentation links, add example description to dataset

Pull Request - State: closed - Opened by ShrimpCryptid 5 months ago
Labels: documentation

#59 - feature: Feature descriptions

Pull Request - State: closed - Opened by ShrimpCryptid 5 months ago - 2 comments
Labels: documentation, new feature

#58 - Idea: UI for converting datasets

Issue - State: open - Opened by ShrimpCryptid 5 months ago - 1 comment
Labels: new feature, needs-detail, Potential Milestone, dataset-management

#56 - fix: Fixed bug where NoneType is not recognized

Pull Request - State: closed - Opened by ShrimpCryptid 6 months ago
Labels: bug, priority

#55 - fix: Added additional checks for numpy values

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago
Labels: bug

#55 - fix: Added additional checks for numpy values

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago
Labels: bug

#54 - Add GitHub action to run `pytest`

Issue - State: closed - Opened by ShrimpCryptid 7 months ago
Labels: new feature, internals

#54 - Add GitHub action to run `pytest`

Issue - State: open - Opened by ShrimpCryptid 7 months ago
Labels: new feature, internals

#53 - feature: Write features as `.parquet` binaries

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago
Labels: new feature, priority

#53 - feature: Write features as `.parquet` binaries

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago
Labels: new feature, priority

#52 - fix: Fixed missing project version number

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago
Labels: bug

#52 - fix: Fixed missing project version number

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago
Labels: bug

#51 - doc: Getting started guide

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago - 2 comments
Labels: bug, documentation

#51 - doc: Getting started guide

Pull Request - State: closed - Opened by ShrimpCryptid 7 months ago - 2 comments
Labels: bug, documentation

#50 - Add version numbers for setuptools

Issue - State: closed - Opened by pgarrison 7 months ago
Labels: bug

#50 - Add version numbers for setuptools

Issue - State: closed - Opened by pgarrison 7 months ago
Labels: bug

#49 - refactor: Renamed to Timelapse Feature Explorer

Pull Request - State: closed - Opened by ShrimpCryptid 8 months ago
Labels: documentation

#49 - refactor: Renamed to Timelapse Feature Explorer

Pull Request - State: closed - Opened by ShrimpCryptid 8 months ago
Labels: documentation

#48 - Add a getting started guide

Issue - State: closed - Opened by ShrimpCryptid 8 months ago - 1 comment
Labels: documentation

#48 - Add a getting started guide

Issue - State: closed - Opened by ShrimpCryptid 8 months ago - 1 comment
Labels: documentation

#47 - Rename to Timelapse Feature Explorer

Issue - State: closed - Opened by ShrimpCryptid 8 months ago
Labels: documentation

#47 - Rename to Timelapse Feature Explorer

Issue - State: closed - Opened by ShrimpCryptid 8 months ago
Labels: documentation

#46 - feat: Outliers + overrides for feature min/max

Pull Request - State: closed - Opened by ShrimpCryptid 9 months ago
Labels: new feature, priority

#46 - feat: Outliers + overrides for feature min/max

Pull Request - State: closed - Opened by ShrimpCryptid 9 months ago
Labels: new feature, priority

#45 - Publish to PyPi

Issue - State: open - Opened by ShrimpCryptid 10 months ago
Labels: new feature, internals

#45 - Publish to PyPi

Issue - State: open - Opened by ShrimpCryptid 10 months ago - 1 comment
Labels: new feature, internals

#44 - Reduce data script complexity

Issue - State: open - Opened by ShrimpCryptid 10 months ago
Labels: new feature

#44 - Reduce data script complexity

Issue - State: closed - Opened by ShrimpCryptid 10 months ago
Labels: new feature

#43 - feat: Validate feature keys

Pull Request - State: closed - Opened by ShrimpCryptid 10 months ago
Labels: bug, new feature

#43 - feat: Validate feature keys

Pull Request - State: closed - Opened by ShrimpCryptid 10 months ago
Labels: bug, new feature

#42 - Check for duplicate feature keys + backdrop keys when writing datasets

Issue - State: closed - Opened by ShrimpCryptid 10 months ago
Labels: bug

#42 - Check for duplicate feature keys + backdrop keys when writing datasets

Issue - State: closed - Opened by ShrimpCryptid 10 months ago
Labels: bug

#41 - Bump version: 1.0.0 → 1.1.0

Pull Request - State: closed - Opened by ShrimpCryptid 10 months ago - 1 comment
Labels: release

#41 - Bump version: 1.0.0 → 1.1.0

Pull Request - State: closed - Opened by ShrimpCryptid 10 months ago - 1 comment
Labels: release

#40 - add conversion utility for TrackMate data

Issue - State: open - Opened by toloudis 11 months ago - 1 comment
Labels: new feature, Potential Milestone, dataset-management

#39 - feature: Update collection JSON to new schema

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: internals

#39 - feature: Update collection JSON to new schema

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: internals

#38 - feature: Dataset metadata writing

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: new feature, internals

#38 - feature: Dataset metadata writing

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: new feature, internals

#37 - doc: Collection object and metadata spec

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago - 1 comment
Labels: documentation

#37 - doc: Collection object and metadata spec

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago - 1 comment
Labels: documentation

#36 - Update dataset + collection spec with names

Issue - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: new feature

#36 - Update dataset + collection spec with names

Issue - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: new feature

#35 - Turn collection JSON into an object instead of an array

Issue - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: internals

#35 - Turn collection JSON into an object instead of an array

Issue - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: internals

#34 - fix: Missing version 'v' in README install instructions

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: bug, documentation

#34 - fix: Missing version 'v' in README install instructions

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: bug, documentation

#33 - New release version: v1.0.0

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: release

#33 - New release version: v1.0.0

Pull Request - State: closed - Opened by ShrimpCryptid 11 months ago
Labels: release

#32 - Add GitHub Action for running pytest

Issue - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: internals

#32 - Add GitHub Action for running pytest

Issue - State: open - Opened by ShrimpCryptid 12 months ago
Labels: internals

#31 - feat: Parallelize `convert_emt_migration_data.py`

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#31 - feat: Parallelize `convert_emt_migration_data.py`

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#30 - feature: Auto-detect feature types

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#30 - feature: Auto-detect feature types

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#29 - refactor: Moved data classes to their own file

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: internals

#29 - refactor: Moved data classes to their own file

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: internals

#28 - Auto-detect features

Issue - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#28 - Auto-detect features

Issue - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#27 - Downsampling for background images

Issue - State: open - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#27 - Downsampling for background images

Issue - State: open - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#26 - feature: Convert new H2B Derek Dataset

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#26 - feature: Convert new H2B Derek Dataset

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#25 - Color logging text

Issue - State: open - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#25 - Color logging text

Issue - State: open - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: new feature

#24 - Keep original segmentation filename when exporting frames?

Issue - State: open - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#24 - Keep original segmentation filename when exporting frames?

Issue - State: open - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#23 - Using `generate_frame_paths` will cause mismatches if datasets skip frames

Issue - State: closed - Opened by ShrimpCryptid 12 months ago - 2 comments
Labels: bug

#23 - Using `generate_frame_paths` will cause mismatches if datasets skip frames

Issue - State: closed - Opened by ShrimpCryptid 12 months ago - 2 comments
Labels: bug

#22 - Bounding box data will be missing when running scripts with `--noframes` flag.

Issue - State: closed - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: bug

#22 - Bounding box data will be missing when running scripts with `--noframes` flag.

Issue - State: closed - Opened by ShrimpCryptid 12 months ago - 1 comment
Labels: bug

#21 - refactor: Python packaging

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: documentation, new feature

#21 - refactor: Python packaging

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: documentation, new feature

#20 - refactor: Made explicit methods for generating frame paths

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#20 - refactor: Made explicit methods for generating frame paths

Pull Request - State: closed - Opened by ShrimpCryptid 12 months ago
Labels: new feature

#19 - Allow frames to start at values other than zero during dataset generation

Issue - State: closed - Opened by ShrimpCryptid 12 months ago - 3 comments
Labels: bug, new feature

#19 - Allow frames to start at values other than zero during dataset generation

Issue - State: closed - Opened by ShrimpCryptid 12 months ago - 3 comments
Labels: bug, new feature

#18 - Parallelize `convert_emt_migration_data.py`

Issue - State: closed - Opened by ShrimpCryptid almost 1 year ago
Labels: new feature

#18 - Parallelize `convert_emt_migration_data.py`

Issue - State: closed - Opened by ShrimpCryptid almost 1 year ago
Labels: new feature

#17 - feat: Added parallelization logic to `convert_nucmorph_data.py`

Pull Request - State: closed - Opened by ShrimpCryptid almost 1 year ago - 1 comment
Labels: new feature

#17 - feat: Added parallelization logic to `convert_nucmorph_data.py`

Pull Request - State: closed - Opened by ShrimpCryptid almost 1 year ago - 1 comment
Labels: new feature

#16 - Add NucMorph features from 2023 segmentation dataset

Pull Request - State: closed - Opened by pgarrison about 1 year ago - 5 comments

#16 - Add NucMorph features from 2023 segmentation dataset

Pull Request - State: closed - Opened by pgarrison about 1 year ago - 5 comments

#14 - feature: Updated documentation for background images

Pull Request - State: closed - Opened by ShrimpCryptid about 1 year ago
Labels: documentation

#14 - feature: Updated documentation for background images

Pull Request - State: closed - Opened by ShrimpCryptid about 1 year ago
Labels: documentation

GitHub / allen-cell-animated/colorizer-data issues and pull requests