Ecosyste.ms: Issues

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GitHub / allen-cell-animated/cell-abm-pipeline issues and pull requests

#22 - Add Python 3.11 to workflows and apply linting to flows

Pull Request - State: closed - Opened by jessicasyu 5 months ago
Labels: type: admin

#22 - Add Python 3.11 to workflows and apply linting to flows

Pull Request - State: closed - Opened by jessicasyu 5 months ago
Labels: type: admin

#21 - Change default class attributes in dataclasses to factories

Pull Request - State: closed - Opened by jacob-evarts 5 months ago - 1 comment

#21 - Change default class attributes in dataclasses to factories

Pull Request - State: closed - Opened by jacob-evarts 5 months ago - 1 comment

#20 - Mutable defaults in ParametersConfig dataclass

Issue - State: closed - Opened by jacob-evarts 5 months ago - 4 comments

#20 - Mutable defaults in ParametersConfig dataclass

Issue - State: closed - Opened by jacob-evarts 5 months ago - 4 comments

#19 - Add docstrings to flows

Issue - State: closed - Opened by jessicasyu over 1 year ago - 1 comment
Labels: type: docs, priority: low

#19 - Add docstrings to flows

Issue - State: closed - Opened by jessicasyu over 1 year ago - 1 comment
Labels: type: docs, priority: low

#18 - Physicell template viz parsing

Pull Request - State: closed - Opened by blairlyons over 1 year ago - 1 comment

#18 - Physicell template viz parsing

Pull Request - State: closed - Opened by blairlyons over 1 year ago - 1 comment

#17 - Bump requests from 2.28.2 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: priority: low

#17 - Bump requests from 2.28.2 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: priority: low

#16 - Bump starlette from 0.25.0 to 0.27.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: priority: low

#16 - Bump starlette from 0.25.0 to 0.27.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: priority: low

#15 - Add exclude cell id option to process samples

Pull Request - State: closed - Opened by jessicasyu over 2 years ago

#15 - Add exclude cell id option to process samples

Pull Request - State: closed - Opened by jessicasyu over 2 years ago

#14 - Add colony depth calculation for colony dynamics

Pull Request - State: closed - Opened by jessicasyu over 2 years ago

#14 - Add colony depth calculation for colony dynamics

Pull Request - State: closed - Opened by jessicasyu over 2 years ago

#13 - Update create voronoi task with height clamping

Pull Request - State: closed - Opened by jessicasyu over 2 years ago - 1 comment

#12 - Bump mistune from 2.0.2 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: priority: low

#12 - Bump mistune from 2.0.2 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: priority: low

#11 - Add functions to initialize single cylindrical cell in fov center

Pull Request - State: closed - Opened by jcass11 over 2 years ago - 4 comments

#10 - Bump lxml from 4.8.0 to 4.9.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: priority: low

#9 - Bump notebook from 6.4.10 to 6.4.12

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: priority: low

#8 - Bump numpy from 1.19.5 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: priority: low

#8 - Bump numpy from 1.19.5 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: priority: low

#7 - Convert PhysiCell outputs to 3D images

Issue - State: open - Opened by blairlyons over 3 years ago
Labels: priority: medium, status: unassigned, type: feature

#6 - Updated initial conditions workflow

Pull Request - State: closed - Opened by jessicasyu over 3 years ago

#6 - Updated initial conditions workflow

Pull Request - State: closed - Opened by jessicasyu over 3 years ago

#5 - remove-lkaccess-add-cartesian-sampling

Pull Request - State: closed - Opened by blairlyons over 3 years ago - 5 comments

#5 - remove-lkaccess-add-cartesian-sampling

Pull Request - State: closed - Opened by blairlyons over 3 years ago - 5 comments

#4 - Add z-sampling and restructure outout data

Pull Request - State: closed - Opened by jcass11 almost 4 years ago

#3 - Metric addition and continued conversion to package form

Pull Request - State: closed - Opened by cdw almost 5 years ago

#2 - Package up the project into an installable format and add metadata

Pull Request - State: closed - Opened by cdw almost 5 years ago

#1 - Add tortuosity measurement.

Pull Request - State: closed - Opened by cdw almost 5 years ago