Ecosyste.ms: Issues

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GitHub / aljpetri/isONform issues and pull requests

#21 - Error during running isONform

Issue - State: open - Opened by NHoang98 27 days ago - 5 comments

#20 - Improve non-batching runs

Pull Request - State: closed - Opened by FabianJetzinger 4 months ago

#19 - Bump setuptools from 65.5.1 to 70.0.0

Pull Request - State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies

#18 - majority clusters after correction was not included in isonform output

Issue - State: open - Opened by alexyfyf 8 months ago - 7 comments

#17 - Running entire pipeline: [Errno 2] No such file or directory

Issue - State: open - Opened by ArnavBharti 10 months ago - 1 comment

#16 - suggestions with big data

Issue - State: open - Opened by alexyfyf 11 months ago - 3 comments

#15 - output need to be reformated

Issue - State: open - Opened by alexyfyf 12 months ago - 3 comments

#14 - Does isONform work with Nanopore dRNA?

Issue - State: closed - Opened by juanjo255 about 1 year ago - 1 comment

#12 - Issue with isONform

Issue - State: open - Opened by molbioinformatics about 1 year ago - 6 comments

#11 - Cycle detection fix

Pull Request - State: closed - Opened by aljpetri about 1 year ago

#10 - Fixed the behavior of minimizers in Poly-A/C/T/G regions

Pull Request - State: closed - Opened by aljpetri about 1 year ago

#9 - Changed version numbers to have consistent version, added try, error …

Pull Request - State: closed - Opened by aljpetri about 1 year ago

#8 - Bubble pop improvements

Pull Request - State: closed - Opened by aljpetri about 1 year ago

#7 - Changing list to set

Issue - State: closed - Opened by ksahlin over 1 year ago - 1 comment

#6 - fixes runtime error when --exact option is not specified

Pull Request - State: closed - Opened by ksahlin over 1 year ago - 1 comment

#5 - Bump numpy from 1.21.5 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#4 - Stable pickle

Pull Request - State: closed - Opened by aljpetri over 1 year ago

#3 - Fixes to README.md

Pull Request - State: closed - Opened by ksahlin over 1 year ago

#2 - Commit 05ac5412 runtime bug

Issue - State: closed - Opened by ksahlin almost 2 years ago - 3 comments

#1 - Removed all calls to finding simple cycles, becuase this completely d…

Pull Request - State: closed - Opened by ksahlin almost 3 years ago